Trachemys scripta elegans (red-eared slider): 117872003
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Entry
117872003 CDS
T07347
Name
(RefSeq) sodium channel protein type 5 subunit alpha-like
KO
K04842
voltage-gated sodium channel type X alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117872003
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117872003
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
117872003
NCBI-ProteinID:
XP_034615825
LinkDB
All DBs
Position
2:13067843..13169001
Genome browser
AA seq
2023 aa
AA seq
DB search
MADFSLPCSNNFCKFTRESLAAIEKRIAAKKECVGQKPEEKPRPQLDLKAFQKLPALYGN
PPQELIGEPLEDLDPYYSDHKTFMVLNKGKTIFRFTATHALCILSPFHPIRRAVIKILVH
KWFTMFIMCTILTNCVFMAIFDSPQKSKSPAAPEWNIYVEYTFTGIYTFEVLIKILARGF
CLNEFTFLRDPWNWLDSSVIAMAYVSIFSRLRSVSVLRTFRVLRALKTISIVPGLKVIVG
ALIQSVKKLTDVMILTLFCLSVFALVGLQLFKGNLRHKCVRRFNYTNGTITSDDKTWDSF
DLFTKDSENVLKKNDTTDSLLCGNGSDAGSCPDKYICLKVGENPDFGYTSFDTFGWAFLS
LFRLMTQDYWERLYQQTLRASGKIYMLFFMVVIFLGSFYLVNLILAVVAMAYQEQNKATI
AETEAKERKFREAMELLIKEQEALSDKGNDTMSLCSFEISSLPSKEVKDRSNLRKKNKSL
GIEDYGEDQKVPKSQSSDDQRKSALLGLTYGASANQMKRRLSHGNMFNFQISGRDIGSKA
DFGCDEISSAGENEIQRGSLLVARTGRLPSVQSQMSHSSYPATPNCMQNGKCNSTDGYNG
VVSLMGGGSTRAYSLEPPASEGLLLPPVMENPRIGDLSTLCDEASKMYLAPRLSVDYFNE
PLQRQRAASAISIITSVLEELEESQQKFPPCLKDFALKYLVWDCCPLWLRLKNKVTILVT
DPFTDLAITVCIVVNTIFMALEHHNMTRPFKFMLCVGNMVFTGIFTAEMILKIIALDPYY
YFQQRWNIFDSLIVTISLIELIDFLPKSGKRRMLSILRSFRLLRVFKLAKSWPTLNTLIK
IIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGEQYVKKYDEKCYKISEDCKPRWHFMDFF
HSFLIIFRILCGEWIETMWGCMVVADKPLCLLVFLLVMVIGNLVVLNLFIALLLNSFSAD
NLQAPEDDGEMNNLKIAFARIHRGLYLVKHATWDYCCGQCQHPKKAAKKKKKLAAKNTCL
KARKEGKNCKENHSNNGTEKNGDKCSVSILEDFITNPNMFVCVPIAEADSDSEHYEEDDD
KPTTFSETEFSKQENHLRQRGEQCKSPGVWSKGSEVFSEDLSEFNICKQRKDESSQGQKE
HLDDISCSEGSTVDLTNPEEFLKQISELAEFVKEPDNCFPEGCVRYFPCCVVNTTKFPGK
MWWNLRKTCYKVVEHSWFESFIIFMILLSSGALAFEDIHLQNRKNIKTMLEFLDQVFTYI
FVLEMFLKWLAYGFRKYFTNAWCWLDFLIVDVSLVTLIDKFLGNSKIGAMKSLRTLRALR
PLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIIGVNQLAGRFGKCVNMTEE
KSVLNKSIKNKQNCTAYNETHKIYWTNGKVNFDNVGSGYLALLQVATFKGWMDIMYAAVD
SPGKEKQPKEEFNPYMYLYFVVFIIFGSFFTLNLFVGVIIDNFNQQKKKISGQDIFMTEE
QRKYYNAMKKLGSKKPQKPIPRPLNKYQGFLFDIVTSQAFDVIIMILICLNMISMMIETD
DQSPEKTNILNKINILFVVIFTVECIMKLLALRHYYFTNGWNIFDLSVVIVSIVGSVLSN
IVKVLEYLFPPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYAIFGMANFAYVKWESGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPFC
DPKTKEVVGECGKPVVGIIFFVSYIIISFLIVVNMYIAVILENFNVATEESTDPLGEDDF
DMFYEVWEKFDPEATQFIGYSALSDFADALAEPLRVAKPNKIELIAMDLPLVSGDRIHCL
DILFAFTKRVLGESGEMDTLKVQMEEKFMAANPSKLSYEPITTTIRHKQEEVSAIIIQRV
YRSHLMQRSMKQASFLYCHRTCDGDILEDAPEKEGLIAFMANENYGRNLDKSETVSSTSF
PPSYDSVTGTTNEHLEVKMADSPQSVEPTNRPLSAEREEESIV
NT seq
6072 nt
NT seq
+upstream
nt +downstream
nt
atggctgacttctcactaccatgttctaacaatttctgcaagttcacgcgtgaatccttg
gctgctattgagaagcgaatcgctgccaagaaggaatgcgtaggtcagaagcctgaagag
aaacctcggccccagcttgacttgaaggctttccagaaactgcctgctctctatggaaat
ccccctcaggagctcattggggaaccactggaggatcttgacccttactacagtgaccac
aagacatttatggtactgaacaaaggaaaaacaatcttccgatttactgccacacatgcc
ttgtgtatacttagcccttttcatccgatcagaagagcagtgattaaaattttggtacac
aaatggttcactatgtttattatgtgcactattttaaccaattgtgtcttcatggctata
tttgattctcctcagaagtctaagtcacctgcagctcctgaatggaacatctatgttgag
tacactttcactggcatttacacttttgaagtattgataaaaatattggcaagaggattc
tgtctgaatgaattcactttccttcgagatccatggaattggttggattccagtgtcatt
gctatggcatatgtatcgatatttagtagactacgcagtgtttcagtccttcgcacattc
agggttctgagagctttaaaaaccatttcaatagtcccaggactgaaggtcattgtaggt
gcactgatccagtctgttaagaaacttactgatgtgatgatcctgacccttttctgcttg
agtgtctttgccctcgtaggcctccagctctttaagggcaatttgagacataagtgtgtc
aggcgttttaactacaccaacggaactattacttcagatgataagacatgggactccttt
gacttgtttactaaagattcagaaaatgttctcaagaagaatgacaccactgatagcttg
ttgtgtggcaatggctcagatgctggctcctgtccagataaatatatatgtctcaaagtt
ggggaaaatcctgattttggctacacaagttttgatacatttggctgggcctttctttcc
ttgttccgcctgatgacacaggattactgggagcgtctctatcaacagactctcagagct
tctgggaagatctacatgctcttttttatggtggtcatctttctgggctcattttatctg
gtcaacttgatcctggctgtagtagcaatggcatatcaagagcagaacaaagctactatt
gcggaaactgaggcaaaggaaaggaagtttcgggaagccatggaactgttaataaaagaa
caagaggcattgtctgataaaggaaatgatacaatgtcactttgctcttttgaaatctcg
tctttaccatcaaaagaagtcaaagatagaagcaacttgagaaagaaaaataagtcctta
gggatagaagattatggggaagatcaaaaagttcccaaatcacagtccagtgacgatcaa
cgaaagtcggctcttcttggtcttacttatggtgccagtgcaaatcaaatgaagcgcagg
ctcagccatggaaacatgttcaatttccagatatctggcagagacattggctccaaagct
gattttggttgtgatgagatcagcagtgctggggaaaatgaaatccagcgtgggtcactg
ttggttgcacggactggaagactaccgagtgtgcaaagtcaaatgagccatagttcttac
cctgctactcctaactgcatgcagaatggcaagtgcaacagcacagatggttacaatggc
gtggtttcattaatgggaggaggaagcaccagggcatacagtctagaaccacctgcttct
gaagggttattgctccctccagttatggaaaaccctagaataggtgatttgagcacttta
tgtgatgaggcgagcaagatgtatttggcccctcgtctgtcagtggattattttaatgag
ccacttcaaagacaaagggcagcaagtgcaatcagtatcattaccagtgtcctggaagaa
cttgaagaatcacaacagaaattccctccatgcttgaaagattttgccctaaagtatctt
gtatgggactgttgtccactatggttgagactcaagaacaaagtgacaattttagtaacg
gatccatttactgacctcgctatcactgtttgcattgtggtgaatactatcttcatggca
ctagagcaccataacatgacacgcccatttaaattcatgctttgcgtaggcaacatggtc
tttactggcatttttactgcagaaatgatcttgaaaatcattgctctagatccttattac
tattttcagcagcgctggaatatttttgacagcttaattgtcaccatcagcttaattgaa
ttaattgactttctacctaaaagcggaaaaagaagaatgctatcaattttacgttctttc
agactgctgagagtcttcaagctggcaaagtcctggccaactttaaataccctcattaaa
atcattggtaactcagtgggtgccctgggtaacctcaccctggttctggcgatcatagtc
tttatttttgccgtggtaggaatgcaactttttggggaacaatatgttaaaaaatatgat
gaaaaatgctataaaatatctgaggattgcaagccacgttggcattttatggattttttc
cactcattccttattatattccgaattctgtgtggagaatggattgagaccatgtggggt
tgtatggtggtagctgataaaccattatgccttctagtcttcttgctcgtcatggtgata
ggaaacctagtggttctcaacctgttcattgcactactgctgaactccttcagtgctgac
aacctccaagcacccgaagatgatggagagatgaacaatcttaagattgcatttgctcgg
atccacaggggactttacctggtgaaacacgcaacatgggattactgttgtggacagtgc
cagcatccaaagaaagctgccaaaaagaaaaagaaattggctgccaagaacacatgtttg
aaggctcggaaagaagggaaaaattgtaaagaaaatcacagtaacaatgggactgagaaa
aatggggacaaatgctcagttagcattcttgaagattttatcaccaaccctaacatgttt
gtctgtgtccctattgctgaggcagattctgatagtgaacattatgaagaagatgatgat
aagccaaccacattctcagaaactgagttctctaaacaggaaaaccacctgaggcagagg
ggagagcaatgtaaaagtccaggagtttggagtaaaggatctgaggttttctctgaagac
ttaagtgagtttaacatatgtaaacaaaggaaggatgaatcttcacaaggacaaaaagag
cacctggatgacatcagctgttctgaaggcagcacagtggatctgacaaatcctgaggag
tttctgaaacagatctctgagctggctgaattcgtaaaagaacctgataactgttttcca
gaaggctgtgttcgatatttcccttgctgtgtggtgaataccacaaagtttccaggcaaa
atgtggtggaacctgaggaaaacctgctacaaagttgttgaacatagctggtttgaaagc
tttatcatattcatgatcctgctgagcagcggtgccctggcatttgaagatattcatctt
caaaacagaaaaaacattaaaaccatgttggaatttcttgatcaagtcttcacttatatc
tttgtcttggaaatgtttctgaaatggctggcttatggcttcaggaagtatttcaccaat
gcctggtgttggcttgatttccttattgtagatgtctctttagtaaccctcatagataag
ttccttggaaattccaaaataggagccatgaaatctcttaggactctccgagctttgaga
ccattaagagcattgtcacggtttgaagggatgagggtggttgtaaatgcattgataggt
gccatcccttccatcatgaacgttctgcttgtctgccttattttctggctcatttttagt
atcataggagtgaaccaattggcaggacgatttggaaaatgcgttaacatgactgaagaa
aaatcagtattaaataaaagtattaagaacaaacagaattgcacagcctataatgagaca
cacaaaatatattggacaaatggtaaagtcaactttgataacgttggttctggttatctg
gctcttcttcaggtggcgacatttaaaggttggatggacattatgtatgcagcagtagat
tcaccagggaaagaaaaacagccaaaggaggaatttaatccgtacatgtacctctatttt
gtggttttcataatctttggatctttcttcacactgaatctctttgtcggtgtcattatt
gacaattttaaccaacaaaagaaaaagataagtggacaagacatctttatgacagaagaa
cagagaaagtattataatgcaatgaaaaaactgggatccaagaaaccccaaaaacctatc
ccaaggccattgaacaaataccaagggtttttatttgacatcgtaacaagccaagccttt
gatgttatcatcatgattctcatctgccttaacatgatcagtatgatgatagaaactgat
gatcaaagtccagagaagactaacattcttaacaaaatcaacatactctttgttgtcatc
tttactgtagaatgcatcatgaaattattggccctaagacactactacttcaccaatggc
tggaacatttttgatttgagtgttgtcatcgtgtccattgttggcagtgtgctctctaac
attgttaaagtattagaatatcttttcccacctacactcttcagagtcattcgcttggct
cgaattggacgaatactaagactcatccgagctgcgaaaggaattagaactctccttttt
gccttaatgatgtcccttcctgctctgttcaacattggcctcttactttttctggtcatg
tttatttacgccatttttggcatggctaactttgcttatgttaagtgggagagtgggatt
gatgacatgttcaacttccaaacctttgctaacagcatgctctgtctcttccaaatcaca
acatctgctggctgggatggtcttctcagtcctattttaaacactggacctccattttgt
gatccaaagactaaagaagttgtgggagaatgtggtaaacctgttgtgggtattattttc
tttgtaagttacatcattatatcatttctcattgttgtaaacatgtatatagctgttatt
ttagagaacttcaatgttgccactgaggaaagtacagatcctctaggtgaagatgacttt
gatatgttttatgaagtctgggagaaatttgatcctgaggcaactcagtttattgggtat
tcggcactttcagactttgcagatgctctggcagaacctttacgtgtagccaaaccaaac
aaaattgagctcatagccatggaccttcccttggtcagtggagataggatccactgtttg
gatattttgtttgctttcactaaacgggtgctaggagaatctggggagatggatactcta
aaagtacagatggaggaaaagtttatggctgccaatccatccaagctttcttatgaacca
atcacaaccacgatcagacacaaacaagaggaagtttctgccattattatccagagggtt
tacaggagtcatttgatgcaacgttccatgaagcaggcctcttttttatactgtcataga
acctgtgatggtgacatccttgaagatgctccagagaaagaaggcctcattgcattcatg
gcaaatgaaaattatggtagaaatttagacaagtcagaaactgtgtcctcaacatctttc
cctccatcctatgacagtgtcactgggaccactaatgagcaccttgaggtaaagatggca
gactctccgcaaagtgttgaacctaccaatcgtccactatctgcagagagagaagaggaa
tccattgtttaa
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integrated database retrieval system
