Trachemys scripta elegans (red-eared slider): 117872004
Help
Entry
117872004 CDS
T07347
Name
(RefSeq) sodium channel protein type 5 subunit alpha-like
KO
K04842
voltage-gated sodium channel type X alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117872004
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117872004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
117872004
NCBI-ProteinID:
XP_034615826
LinkDB
All DBs
Position
2:13254351..13354225
Genome browser
AA seq
1887 aa
AA seq
DB search
MADFSLPCSNHFRQFTRESLAAIEKRIAANKKYKDRQPKEKPRPQLDLQVFQKLPTLYGN
PPHELVGKPLEDLDPYYNDHKTFMVLNKRKTIFRFTATRALCILSPFNPIRRAVIKILVH
SLFTIFIMCTILTNCVFMAKFEIPRKSNSKSSLPSSWNKYVEYTFTGIYTFEVLIKILAR
GFCLNEFTFLRDPWNWFDISVIAMAYAGEFSNIGNVSVLRTFRVLRALKTISILPGLKVI
VGTLIQSIKKLADVMILTAFCLSVFALIGLQLFKGNLRHKCVRNFNSTNGTIYLDDKKWG
SFDEFINDSENVFKKNGTKDPLLCGNSSDAGSCPDKYVCLKVGENPDFNYTSFDTFGWAF
LSLFRLMTQDYWERLYQQTLRASGKIYILFFVLVIFLGSFYLINLILAVVTMAYEEQNKA
TIAETEAKERKFQEAMELLKKEQEALAAKGNDTKSLCSFEMSPLPSKEVKDRSNRRNKNM
SLGREDYGEAQKVPKSQSSSRQQNLTPVCDEVSKKHLPHHLSVDYFNEPLQSQRTTGAVS
TITCVLEESQQKCPPCLKNFALKYLIWDCCPLWLRIKKKVTILVMDPFTDLTITLCIVMN
TIFMALEHYKMTRSLKFMLDVGNKVFTGIFTAEVILKIIALDPYYYFQQRWNIFDSIIVT
VSLIDLSVYTKAKERKERGNLLVLRSFKLLRVFKLAKSWTTLNTLIKIIGNSVSAMGNLT
LVLAIIVFIFAVLGTQLFGKSYKEHCCKISDDCKPRWHMMDFFHSFLIIFRILCGEWLET
MWDCMVVAGQPLCLIVFLLTMVIGNLVVLNLFIALLLNSFSADNLQAPEEDAEMNNLQIA
FARIHKGLRLLKHAIWDYCCGKLWQPKKITKKKMKLAAQNTCVEIGKEGKNCKENHSDNV
TEKNGEKCSVSILEDFITNPNMFVCVPLADAESDSEDYEDDDNKSSKFTEMEYSKQQENH
LRQRGEQCKRPGAWCKGSEISSKDLSEFNIDKQLKAGSSSLLQKEQLDDISCSEGSTVDL
TNPEELLKQIPELAEYLKKPDNCFPEGCIRHSPCCSVNTTKFPGKTWWNLRKTCYKIVEH
DWFESFIIFMILLSSGSLAFEDIHLEKRKNIKIMLEFFDKIFTYIFVLEMFLKWVAYGFK
KYFTNAWCWLDFLIVGVSLASLIASSLGNTEMGPMKSLKTLRALRPLRALSQFEGMRVVV
NALVGAIPSIMNVVLVCLIFWLVFSIMGVHLFAGKFGKCVNLTEGKSELNTSIKNKQNCT
AYNETQKMYWTNGKVNFDNVGSGYLALLQVATFKGWTDIMYAAVDSRGKEKQPKKENNPY
MYLYFVVFIIFGSFFTLNLFVGVIIDNFNQQKKKISRQDIFMTEEQRKYYNAMKKLGSKK
PQKPIPRPLNKYQGVLFDIVTSEAFDIIIMILICLNMITMMVETDDQSIRKTDILNKINM
FFVAIFTVECIVKLLALRHYYFTNGWNIFDLSVVIMSVVGTLLSHIVNAFENYFSPTLFR
VIRLAQIGRILRLVQAAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMANFAYVQ
WESGIDDMFNFQTFANSMLCLFQMTTSAGWDGLLSPILNTEPPFCDPNIRDVVGECGKPV
VGIIFFVSYIIISFLIVVNMYIAVILENFNVATEESTVPVGEDDFDMFYKIWEKFDPEAT
QFIEYSVLSDFADALAEPLRIAKPNKIKLIAMDLPLASGDRIHCLDILFAFTKRVLGESG
EMDKLKEQTEEKFMAANPSRFFHEPITTTLRHKEEEVSAIIIQRAYRSHLIQRSMKQASL
LYHRTCDGDILEDASQKEGLIAFMMNENYGRNLDKSETVSSTSFPPSYNSVTGDTNDNLQ
VKTADSSKCDVPIGCQLSPDKDKESIV
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggctgacttttcactaccgtgttctaaccatttccgccagttcactcgtgaatcttta
gctgctattgagaagcgaattgctgccaacaagaaatacaaagaccgccaacctaaagag
aaacctcgtccccaacttgacctgcaggttttccaaaagctgcctactctctatgggaat
cctcctcatgagcttgttgggaaaccactggaggatcttgacccttattacaatgatcac
aagacatttatggtactgaacaaaaggaaaacaatcttccgatttactgccacacgtgcc
ttgtgtatacttagcccttttaatccgatcagaagagcagtgattaaaattttggtacat
tcattgttcactatttttattatgtgcactattttaaccaattgtgtcttcatggctaaa
tttgagattcctaggaagtctaattctaagtcatctttaccttcttcatggaacaagtat
gtcgagtacactttcactggcatttacacttttgaagtattgataaaaatattggcaaga
ggattctgtctgaatgaattcactttccttcgagatccgtggaattggtttgatatcagt
gtcattgctatggcatatgcaggggagtttagtaatataggcaatgtttcggtccttcgt
acattcagggttctgagagctttaaaaactatttcaatactcccaggactgaaggtcatc
gtaggtacacttattcagtctattaagaaacttgctgatgtgatgatcctgacagctttc
tgcttgagtgtctttgccctcataggcctccagctctttaaaggcaatttgagacataag
tgtgtcagaaattttaactccaccaatggaactatttatttggatgacaaaaaatggggc
tcctttgatgagtttattaatgattcagaaaatgttttcaagaagaatggcaccaaggat
cccttattgtgtggcaacagctcagatgctggctcctgtccagataaatatgtatgtctc
aaagttggggaaaatcctgattttaactacacaagttttgatacatttggctgggccttt
ctttccttgttccgcctgatgacacaagattactgggagcgtctgtatcaacagactctc
agagcttctgggaagatctacatactcttttttgtgctggtcatctttttgggctcattt
tatctgatcaacttgatcctggctgtagtgactatggcatatgaagagcagaacaaagct
actattgctgaaactgaggcaaaggaaaggaagtttcaggaagccatggaactgttgaaa
aaagagcaagaggcattggctgctaaaggaaatgatacaaagtcactttgctcctttgaa
atgtcacctttaccctccaaagaagtcaaagatagaagcaataggagaaataaaaatatg
tccttagggagagaagattatggggaagctcaaaaggttcccaaatcacagtccagtagc
cgtcaacaaaacttgactcctgtatgtgatgaagtgagcaagaagcatttgcctcatcat
ctgtcagtggactattttaatgagccactacaaagtcaaaggacaactggggcagtcagt
accattacctgtgtcctggaggaatcgcaacagaaatgccctccctgcttgaagaacttt
gccctaaaatatcttatttgggactgttgtcctctgtggttgagaatcaagaaaaaggtg
acaattttagtaatggatccatttactgacctcactatcactctttgcatcgtgatgaat
actatcttcatggcactggagcactataagatgacaagaagtttaaaattcatgcttgac
gtaggcaacaaggtctttactggaatttttactgcagaagtgatcttgaaaatcattgct
ctagatccctactactattttcagcagcgctggaatatttttgacagcataattgtcacc
gtaagcttaattgacctgagtgtatacaccaaagctaaagaaagaaaagaacggggaaac
ctgttagttttacgttccttcaaactgctgagggtcttcaaactggcaaagtcctggaca
actttgaatacacttattaaaatcatcggtaactcagtgagtgccatgggtaaccttacc
ctggttctggcaatcatagtctttatttttgctgtactaggaacgcaactttttggtaaa
agctacaaagaacattgctgtaaaataagtgacgattgcaagccacgttggcatatgatg
gattttttccactcattccttattatattccgaattctgtgtggagaatggcttgaaacc
atgtgggattgtatggtggtagctgggcaaccgttatgccttattgtcttcttgctgacc
atggtgataggaaacctagtggttctcaacctgttcattgcactactgctgaactccttc
agtgctgacaacctccaggcacccgaagaagatgcagagatgaacaaccttcagattgca
tttgctcggatccacaaaggacttcgcttgctgaaacatgcaatatgggattactgttgt
ggaaagctctggcaaccaaagaaaatcaccaaaaagaaaatgaaattggctgctcagaac
acatgtgtggagattgggaaagaagggaagaattgtaaagaaaatcacagtgacaatgtg
acagagaagaatggagagaaatgctcagttagcattcttgaagattttatcaccaacccc
aacatgtttgtctgcgtccctcttgctgatgcagaatctgatagtgaggactatgaagat
gatgataataagtcaagtaaattcacagaaatggaatacagtaaacagcaggaaaaccac
ctgagacagaggggagagcaatgtaaaagaccgggagcttggtgtaaaggatctgagatt
tcctctaaagacttaagtgagtttaacatagataaacagttgaaggctggatcatcatct
ctactacaaaaagagcagcttgatgacatcagctgttctgaaggcagcacagtggatctg
acaaatcctgaggagcttctgaaacagatccctgagctggctgaatacttaaagaaacct
gataactgttttccagaaggctgtattcgacattccccttgctgttcagtgaataccaca
aagtttccaggcaaaacatggtggaacctgaggaaaacatgctacaaaattgttgaacac
gactggttcgaaagctttatcatattcatgattctgctaagcagtggaagtctggcattt
gaagatatacatcttgagaaaagaaaaaacattaaaattatgttggaattttttgataaa
atcttcacttacatctttgtcctggagatgtttctgaaatgggtggcttatggcttcaag
aaatatttcaccaatgcctggtgttggcttgacttcctaattgtaggtgtctctttagca
agccttatagccagctcacttggaaataccgaaatgggacccatgaaatcccttaaaacc
ctgagagccttgagaccattaagggcattgtcacaatttgaagggatgagggtggtggtg
aatgccttagtaggtgccatcccttccatcatgaatgttgtgcttgtctgcctcattttt
tggctcgtttttagtatcatgggagtgcacctatttgcaggaaaatttggaaaatgcgtt
aacttgactgaaggaaaatcagaattaaatacaagtattaagaacaaacagaattgcaca
gcctataatgagacacaaaaaatgtattggacaaatggtaaagtcaactttgataatgtt
ggttctggttatctggctcttcttcaggtggcaacatttaaaggttggacagacattatg
tatgcagcagtagattcacgagggaaagaaaaacagccaaagaaggaaaataatccgtac
atgtacctctattttgtggttttcatcatctttggatctttcttcacactgaatctcttt
gttggtgtcattattgacaattttaaccaacaaaagaaaaagataagtagacaagacatc
tttatgacagaagaacagagaaaatattataacgcaatgaaaaaactgggatccaagaaa
ccccaaaaacccatcccaaggccattgaacaaataccaaggggttttatttgacattgta
acaagcgaagcctttgatattatcatcatgatactcatctgccttaacatgatcactatg
atggtggaaactgatgatcaaagtataaggaagactgacattcttaacaaaatcaacatg
ttctttgttgccatctttactgtagaatgcatcgtgaaattgttggctctgagacactac
tatttcaccaatggctggaacatatttgatttaagtgtggtcattatgtctgttgttggc
actctgctttctcacattgttaatgcatttgaaaattacttctcacctacactcttcaga
gtcattcgattggctcagattggacgaatactaagacttgtccaagctgccaaaggaatt
agaactctcctttttgccttaatgatgtcccttcctgctttgttcaacattggcctctta
ctttttctggtcatgtttatttacgccatttttggcatggctaactttgcttatgttcag
tgggagagtgggattgatgacatgttcaacttccaaacctttgctaatagcatgctctgt
ctcttccaaatgacaacatctgctggctgggatggtcttctcagtcctattttaaacact
gaacctcccttttgtgatccaaacatacgagatgttgtgggagaatgtggtaaacctgtt
gtgggtattattttctttgtaagttacatcattatatcatttctcattgttgtaaacatg
tatatagctgttattttagagaacttcaatgttgccactgaggaaagtacagttcctgtg
ggtgaagatgactttgatatgttttataaaatctgggagaagtttgatcctgaagcaact
caatttattgagtattctgtactttcagattttgcagatgctttggcagaacctttacgc
atagcaaaaccaaacaaaattaaactcatagccatggaccttcccttggccagcggagat
aggatccactgtttggatattttgtttgcttttaccaaacgggtgctaggagaatctggg
gaaatggacaaactaaaagagcagacagaggaaaagtttatggctgccaatccatccagg
ttttttcatgaaccaatcacaaccacgctcagacacaaagaagaggaggtttctgccatt
attatccagagggcctataggagtcatttgattcaacggtccatgaagcaggcctctctt
ttatatcacagaacttgtgatggtgacatccttgaagatgcttcacagaaggaaggtctc
attgcattcatgatgaatgaaaattatggtaggaatctagacaagtccgagactgtgtcc
tcaacatctttccctccatcctataacagtgtcactggggatactaatgacaacctccag
gtaaagacggcagactcttccaaatgtgatgtacctataggttgtcagctatctccagac
aaagataaagaatccattgtttaa
DBGET
integrated database retrieval system
