Trachemys scripta elegans (red-eared slider): 117878443
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Entry
117878443 CDS
T07347
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117878443
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117878443
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117878443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
FAN1_HTH
Motif
Other DBs
NCBI-GeneID:
117878443
NCBI-ProteinID:
XP_034628523
LinkDB
All DBs
Position
5:complement(67737091..67812816)
Genome browser
AA seq
1799 aa
AA seq
DB search
MASAQTDPEEDGSVNGSESESSADEESETTDSSLEHYSSPFDGEEDGEKEIEEDKSHLNF
SDILRGEEESQHVSKADREDSKELRDRYDSQNPEKRECLGFLKKLSLFIWKSLSQAKYVR
LLNDFVESEFFVIDGDSLLLEYLCKKRQYLPFFYLVECFLLDFTQKGAKYVIVFFKDVEQ
MYFSYPNFLFHRTALIQHLKCNTDIVIHTEFSNCFSPEWLIFLKESYPYFVIISDIGLTS
LQEDYLHIFIAHTLSKKISVVLTSGQESDALTVYGYYVQNVYEHRLFFQQHEKDLQHTCE
AMVKHLQKFQTTAYLYNLKLSLRNIQEEVCRTILLLKHLWPEGADIRCIVCVLTCIVGLK
MYSNMLENAKVSEETKEQLTKNFSQKEKSESLTLEEAADLCRLQCLSVVFLLHLPLSQRA
RIRIINSCWTKQVLPFIIMQQHCDYFVLKQLEDESDWKLDLTHLPDLRDNSLLKNLSHYY
EIEYCSGLHFELGKEIKCEYQYLWNTVTKLASSCDFGDAFPVRTTSQLFLEQKQMVFKES
KEEIPSIGLIPVKSDLVEDYAGAVLADLPILSSNNPAVTSLIKQTEFDELRHWHSGKPLS
DDYDRTKCSNDAKSKGPKERRGIQKLQSYYRLYGRSLEGNISKTIVTQVDVPLVPTSTKT
AVTKTKKLHKSKAEIIAEENQKRLEAKEEKKEQEQWSALSVSIEREIKENFTCGINKLEN
FLKTCQSNSVKFTAEMAGLNVCLEVWKEHCRNQGKKSRDLSIAVQVMRRIHILLEKHQEL
LKKPHVQKLSRCLKYLGFENLACSLSSLIIESDNEKIVKYTTEMGAARFQLQYMGCYLFR
EERKDPDPRVQHFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASFYCMEKVLKESNEG
VVVYVSPTKALVNQVMGTIYNRFTKTLPHGLVVGGTFTRDYRHDTLNCQILVTVPQCLEI
LLLSPHRQDWVKRIRYVIFDEVHCLGGEIGAEVWEHLLVMIRCPFLALSATISNPEHLTE
WLQSVKRYWQLAESTIEESPGSSTTARKCTRKQKLQKTKKSYRVRLVLHGERYNDLEKYV
CSLKDNDFIIDHYHPCAALTVSHIENYGLPLDIAFSPRESIQLYDMMAKVWEEWPRLQEL
DPEEFTCFKNKIVITKADAKNYEQELKKELINWIILGQREKVHQLLESLKPHPVDCSENE
KRIRFAHFVKKLQDMDKLPAIFFMFNIHSVERTAMDTFYNLMKKQRSERDPNIEKKIKSL
TDKLRKTNKTLGKCLAANLKKESSTKLERMILNLNKKQDLKKRLEKLTKVPPDSTYANSK
AVDKETLMEIFHRIRFQRKSFLLRMLAQKGIGYHHASMSYKERQVVEMLFRMGYIRVVTA
TGSLALGINMPCKSVVFTEDSVYLDALNYRQMSGRAGRRGQDMIGSVFFYDIPLPKVEKL
IKSNVPQLKGQFPLSISLVLRLMLLAAKADDKADARAKVLSVLKHSLLSFKQKQNSEMLK
VYFIFSLQFLVKEGYLDQEGNPMGFTGLVTHLHYHEPSNFILVSFLVKGLFHKLCQPVEN
GSTVFSEDVMEKLVLVLANLFGRRYLPACATKFRRTSCQSKVFLEDLPEEFAAAVHEYNC
KIKKNFGCFLLTVAKLADMEQEYQLPLSRIDFTHKECDNSELTSHLMNSTKSIASVSPFI
CLSGTIDQDLFDAENVNEAVLRTIGVNVRNAPLCWLEKYDNQGRRMPLNAYALDFFKHGS
LIALTTDNWLNEGDAYNLLKDFSLLIKAIRTSLGELCDDPNDNVVLAFQQLSESYSAKL
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacaaactgatcctgaggaagatgggagtgtgaatgggagtgagagtgag
agtagtgctgatgaagagagcgagaccacggatagtagtctggagcattattcttctcca
tttgacggagaagaagatggagaaaaagaaattgaagaagataaaagccatcttaatttt
tcagatatattgagaggtgaagaagaatcacaacatgtttcaaaagctgatagagaagat
tccaaagaacttagggacagatatgattcccaaaatcctgaaaaaagagaatgtcttgga
tttctgaagaaattgtctttattcatttggaaatccctgtcacaagctaagtatgtcaga
ttactaaatgattttgtagagtctgaattttttgtgattgatggggattccctacttctc
gagtatttatgcaagaaaagacagtatctgccgttcttttacttagttgaatgctttcta
cttgatttcacacaaaaaggagcaaaatatgtaattgttttcttcaaggatgtggaacag
atgtatttcagttaccctaatttccttttccatcgtactgcattaatacaacacctgaag
tgcaacactgacattgtcattcatacagagttttccaactgtttctcaccagaatggctg
attttcctcaaggaaagttatccatattttgtgataatctctgacataggactgacctct
ctacaagaagactatttacatatatttatcgctcataccttgtcaaagaaaatcagtgtt
gtgctcacttcaggacaggagtctgatgctcttacagtttatggatattatgtccagaat
gtgtatgaacacaggttattttttcagcagcatgaaaaggatctgcaacatacttgtgaa
gccatggtcaaacacttacaaaaattccagactacagcctatctgtataatttaaagctg
agcttgagaaacatacaagaagaggtatgtcggactattttgctgctgaagcacctgtgg
ccagaaggagccgacattagatgtattgtttgtgttcttacatgtatagtgggattaaaa
atgtacagtaacatgttagaaaatgcaaaagtctctgaggaaacaaaggaacaactaaca
aaaaatttcagtcaaaaggagaaaagtgaatcattaacactggaagaagccgcagacctg
tgtagattgcagtgcctcagtgtggtttttcttctccacttgcctctttcacaacgagct
cggattaggataatcaattcctgctggactaagcaagttttaccatttataatcatgcaa
caacattgtgactattttgttctgaagcaactagaagatgaaagtgactggaaattggat
ttaactcacctgcctgatttaagggacaattcactgttaaagaatctttcacattactat
gaaatagaatactgctcagggttacattttgaattgggcaaggaaattaagtgtgaatac
cagtatctgtggaatacggtaacaaaattagcttccagctgtgattttggagatgctttc
ccagtgagaactacttcacaactgtttcttgaacagaaacaaatggtatttaaagaatct
aaggaagaaattcccagtatagggctcatcccagtgaaatctgaccttgttgaagattat
gctggagctgttttggcagatttacctattttaagcagcaataatcctgcagttacttca
cttattaaacaaacagaatttgatgaacttcggcattggcattcaggcaaacctctcagt
gatgattatgacagaacgaagtgcagcaatgatgcaaagtccaaaggtccaaaagaaaga
agaggcatacaaaagttacagtcttattatcgactttatggaagatcgttagaaggcaac
atttcaaagacaattgtaacccaggtggatgtgcccttggttcccacaagcactaagact
gctgtcacaaagacaaaaaaattacataaaagtaaagcagaaataattgcagaggaaaac
cagaagcgactagaagctaaagaagagaagaaagaacaggaacagtggagtgccttatct
gtgtcaattgaaagggaaattaaagagaattttacctgtggaataaataaactggagaat
ttcctcaagacatgtcaaagtaattctgtgaaattcacagcagaaatggcaggactgaat
gtctgtttagaagtttggaaggaacactgcagaaaccaaggcaaaaaatcaagagattta
agcatagctgtccaagtgatgaggagaattcacatacttcttgaaaaacaccaggaacta
ttaaagaagccacatgtacaaaagttgtccagatgtctgaaataccttggatttgagaat
ttggcatgctctttgtctagcctgataatagaaagtgacaatgagaagatagtaaaatat
actactgagatgggagcagctcgttttcagctacaatatatgggctgttacttgttcaga
gaagagaggaaagatccagatcccagagtacagcattttataccagatacatggcagcga
gagcttcttgatgttgtagacaataatgagtctgcagtgattgttgcgcctacttcatca
gggaaaacctatgcatcattttattgcatggagaaagttctgaaagagagcaatgaagga
gtagttgtatatgtttcaccaacaaaggctcttgtaaaccaagtgatgggaactatatac
aatcggttcaccaagacattgcctcatggattagtagtaggtggaactttcacaagggat
tatcgccatgataccctgaactgtcagatacttgtgacagtgcctcagtgtttagaaatc
ttgttgctatctcctcatcgccaggattgggtcaaaagaataagatatgttatatttgat
gaggtacattgtcttggtggggaaattggagcagaagtttgggagcacctcctggttatg
attcgatgtccctttctggctctctctgcaactatcagtaatcctgaacaccttactgag
tggctacagtcagtaaaaagatactggcaacttgctgaaagtacaatagaagaaagccct
ggttcttctacaactgccaggaaatgtacaaggaagcaaaaactacaaaaaacaaaaaaa
tcatatcgagttagactagtattgcatggagagagatacaatgatctggaaaagtatgtg
tgttctctcaaggataatgattttatcattgatcactatcacccatgtgctgcattaaca
gtcagtcatattgagaactatggccttcctttagacattgccttctctccacgagagagt
atccagctatatgacatgatggcaaaagtctgggaagagtggccaagattacaggagtta
gatcctgaggaatttacctgtttcaagaataaaatagtaatcacaaaggcagatgcaaaa
aattatgaacaggagctgaagaaagaactaatcaactggattatacttggccaaagagag
aaggtgcatcagctgctggagtcccttaaacctcaccctgttgattgttcagaaaatgaa
aagcggatcagatttgcacattttgttaaaaaactacaagacatggataaattgcctgcc
atattttttatgtttaacattcattcagtagaaagaacagccatggatacattttataat
ttgatgaaaaaacaaaggagtgaacgagatccaaatattgagaaaaaaataaaaagttta
acagacaaactaagaaaaacaaataaaactctagggaaatgtctggctgctaacctaaaa
aaggagtcttccactaaacttgagagaatgatccttaatttgaacaaaaaacaagattta
aagaaaagacttgaaaagcttactaaggtccctccagacagtacttatgctaattctaaa
gctgtggataaagaaaccttgatggagatctttcatcgaattaggtttcaaagaaagagt
ttcctgctgagaatgttggcacagaagggtattggatatcatcatgcttcaatgtcatac
aaagaaagacaagtcgtggagatgcttttcaggatgggatatatccgggtggttacagct
actggatcacttgctttgggaatcaatatgccatgtaaatctgttgtctttactgaagat
tctgtctatttagatgctctgaattatagacagatgtctggacgtgctggaagacgtgga
caagatatgataggaagtgtgttcttctatgatatcccactgcctaaggtcgaaaaactt
ataaaatccaatgtaccccaactgaaaggccagttccctctgagtatttccctggtactg
agactcatgctattggctgcaaaagcagatgacaaagcagatgccagagcaaaggtgctg
tcagtgttgaagcactcactgctgtccttcaaacaaaaacagaattctgaaatgttaaaa
gtatactttatcttttccttgcagtttcttgtcaaagagggctacttggatcaagaaggt
aaccctatgggatttactggacttgtgacccatttacattatcatgaaccttcaaatttt
atcctagttagctttcttgtgaaaggtttatttcacaaactgtgccagccagttgagaat
ggctcgactgttttttctgaagatgtgatggaaaaattagtgctagtgctagcaaactta
tttggaaggagatatctaccagcctgtgctacgaaatttagaagaacatcttgccagtca
aaggtgtttctagaagatctcccagaagagtttgctgctgctgttcatgaatacaactgc
aaaataaagaagaattttggttgttttcttctaacagttgccaagctggctgacatggaa
caagaataccaacttcctttatcaaggatagattttacacataaagaatgtgataactct
gaactgacatctcatttgatgaatagcaccaaaagcatagcttctgtgtcacccttcata
tgcctgtctggaaccattgaccaggatttatttgatgctgagaatgttaatgaagctgtc
ttgcgtacaattggtgttaatgtcagaaatgctcctctgtgttggttggagaaatatgat
aatcaaggaagaagaatgccactgaatgcttatgcccttgacttttttaaacatggctcc
ttgattgcactgacaacagataattggctaaatgaaggagatgcttacaatctactcaaa
gatttttcacttcttattaaagcaattagaacatccttaggtgaactttgtgatgatcca
aatgacaatgttgtacttgcatttcaacaactgagtgaaagctacagtgcaaaactgtag
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integrated database retrieval system
