Trachemys scripta elegans (red-eared slider): 117878886
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Entry
117878886 CDS
T07347
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117878886 (FREM1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Jag_N
Motif
Other DBs
NCBI-GeneID:
117878886
NCBI-ProteinID:
XP_034629437
LinkDB
All DBs
Position
6:102424250..102521522
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AA seq
2185 aa
AA seq
DB search
MKPFENSCRFPLLAVILRCVCSSFISVNLGVKVMKGQSVFLSEDDLQFSIPREKDACKVE
VVINEPITQRVGKLTPQVFDCHFLPNEIKYTHNGCPILDEDMVMLRLYRFTETETFTEMF
ILQVQLLEPDCNIIKMSTNVLEVPEFYGLSREIDKNVLTFDYDKKTNLECTIKLASLETL
LPAHGQLVIGEPQQEEPRGDQPHSFFPRSKHRTSQRCRSGLCDPELKMIQNTKMSCEEFL
LMGIRYQHLDPPSPNIDYIPIRLDLTDSRSKTLHKTEHAWLPVQIKGAIPNQIPRAAFMA
MFILEVDQFILSPMTTTTVDAEDSETPKSLLVFNITKPPPQGYITHLLDHTKPITSFTWK
DLSEMLIAYQPPNNSHTERRNYEVELEVHDFYFERSSPITVHISIRTTDTNAPRVSWNTG
LDLLEGQSRPITWQQFQIVDNDNIRGVRLVTIDGLQHGRLTVRGGKGFMFTVSDLRAGVV
RYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINILPKDDSPPFLISNVVIELYEGQTVLIQ
GSMLQASDMDSSDDYILFNVTKPPQAGEIMKKPGPNLIGYPVTGFLQRDLFNGLIYYRHL
GGEIFEDSLEFVLCDSHDPPNLSEPQLVIVHIIPVDDQLPKEASGVTRHLAVEETKIAHL
TKKHLHFIDMEAQERELIYTVTTSPFFSFTHGPSDAGKLFMVDSIPKLVKDPSVPALRSF
TQHAVNYMKVAYMPPIQDIGPEPQHVQFIFSVSNQHGGTLYRICFNITVLPVDNQAPEVF
TNNLKVEEGGLCTITGSHILMSDVDTKQENLHIYLQRLPLHGMVELDGFPMNKGDRFTCQ
DLHMLKVRYQHDGSETLHDDILFAATDGINSLEFVLQVKVLPVNDEPPIMKDGLIPLIQC
PEGEEVVITSEYIYATDADSDDMKLTFMLARQPYYGVVRKAGIVVDRFSQADVVSRVVTY
KHTSGEIGLTPCFDTLTLVISDGEAGMDVNDCCYDGLLPPPVPLHDSFPVYDLNISVFPV
DNQPPSITIGAMFVVDEGFSAVVTANNLFATDPDTAADDLEFVLVSPPQFGYIENIVPSP
GFEKSNIGISIASFQLKHLKALHINYVQSRHVRTEPTSDQFMIYVTDGKHHSVETPFYVL
INPTNDEVPEFIARNITVQEGQMKELDPSVINVIDLDVPQDRLMFTIVQQPQHGFLINGV
YGNDVMNYKRFINSHHNHERPVHDFSMELLKNGMRLVYMHDDSENLTDGFTLQLSDGKHK
VLRTILVKVIPVNDEKPMLSKKDEIEVNMGETRIISSAVLSAEDKDTSRDRIYYLFERIP
ENGQLQLKVGRDWVTLQTEMKCTQEEIDMNLVRYVHTGAMGSRNQDSFTFHLWDGDNKSP
AMDFYITIKDMEKGDIAVFVRPLTVSKGDRGFLTTDVLLAIDGTEKPEELLYVITSPPQY
GQIEYASYPGVPITSFSQMDVAGQTVCYVHNSKAAAPRDLFRFIISNGLKTKHGTFEIML
ETVDQALPIVSRNKGLRLVEGTMALLSPDVLQLSDADTSSKNLTFLLAQLPQYGHLCYRG
AVLLQHNFTQQDVDNMDMAYRHGGGASQIDRFTFVATDRTNEGFIVDGKVQMEPVAFTIQ
VDHLDKTAPKIVHLHCSSDVELLKNGNYGIYITARSLKAYDPDTEEDQVIFKILRGPRYG
YLENITTGGFIQEGFSQKDLNGKIILYVINPSWEVNSDSLEFQVTDPTGNSAAPQTLELR
WSQIEIQQAEYVVCENVGMLPLKITRLGHSMDSAFIAVKVNEVTATLGKDFTVTPSKLIQ
FDPGMSTKTWNIAITYDGLEEDDEVFEVVLNSPVNAILGTRTKAVVKILDSKGGQCSSFH
SSGQNKHNLWGTGALLPVSSGSSSPSNPGTVHLEEIPLSSSKEMMVQRGDVLQEFNLLNL
SRMRLRAVRNGKIVYPSSVLRNGTNVAFKYHGLVSLRVEDDTSSANANKANKSIINQGRT
KINVISSRKTEVPQADKAELMSESHSNQQDLVLSFPKSCTPDLEGLLHFEESTQNLFQCD
GISWKLWTSKSKDVSMKKCPSGWSHHGGSCYFLITDQKVTWNTAARACREQYLGSLASVV
TKQHMQWLWDFSGRKPFWIGFNDQVNPGHWEWHGGEPVTFTNWRRSPSRLSKQGKNCVLV
QRRGKWQAKDCRKGNRHNYICSRKL
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttttgagaatagctgtcggtttccactgctcgctgttatcctgagatgcgtc
tgctcctcctttatcagtgtcaaccttggggtgaaagtgatgaagggccagtctgtcttc
ctgtcagaagatgacctgcagttttccatccccagagagaaagatgcttgcaaagtggaa
gttgtgattaatgagccaataacacagagggttgggaaactaactccacaggtatttgac
tgtcatttccttccgaatgaaatcaagtatactcataatggctgtccaattttagatgaa
gacatggtcatgcttaggctgtacagatttacagaaactgaaacattcacagaaatgttc
atccttcaagtgcaattacttgagccagattgtaatatcatcaaaatgagcaccaatgtg
ctggaggtccctgaattttatggcctgtccagggagattgacaagaatgtgctcactttt
gactatgacaagaagacaaacctggagtgcaccatcaaactggcttctttagaaactctt
ctaccagcccatggtcaacttgtcattggagaacctcagcaagaagagcctcgtggagat
caacctcatagcttcttccctagatccaagcacagaacaagccaaaggtgcaggagtggg
ctctgtgatccagaactgaagatgattcagaacaccaaaatgagctgtgaggaatttttg
ctgatgggaattagatatcagcatcttgaccccccttcacctaacattgattatattcct
atcaggctggacctcacagacagcagaagcaaaacgctgcacaagacagagcatgcatgg
ctccctgtccaaatcaaaggtgccattcctaaccaaatccccagagctgccttcatggct
atgttcatcctggaggtggatcagtttattttgagccccatgacaacaacaacggtggat
gctgaagacagtgaaacacccaaatccctgctagtgttcaacattaccaagccaccccca
caaggctacatcactcatctgttagaccataccaagcctatcacctccttcacgtggaaa
gatctcagtgagatgcttatcgcatatcagcctccaaacaacagccatacagagaggagg
aattatgaggtggagttagaggttcatgacttctactttgaaaggagttcaccaatcact
gtgcatatctccatcagaacaacagatacaaatgctcctcgggtttcatggaatacaggc
cttgatctcctggaagggcagtcccgaccaatcacatggcaacagtttcaaatagtggac
aatgacaacatcaggggtgttcgcttggtcacaattgatggcttacagcatggacggctc
actgtaagaggcgggaaaggattcatgttcacggtctctgacctgagggctggggttgtt
cgctaccaccatgatgacagtgactctacaaaagattttgtggtatttaggatctttgat
ggtcaccacagtattcgccataagtttccaatcaatatcctgcctaaagatgacagcccc
cctttcctgatcagcaatgttgtaattgaactgtatgaagggcagaccgttctgatccag
ggctccatgcttcaagcgtctgacatggactccagtgatgactacatactctttaatgtt
accaaaccaccacaggctggagaaatcatgaagaaaccagggccgaaccttatagggtat
cctgtcactggcttccttcagagagatctgtttaatggactaatttactaccgtcactta
ggaggagaaatatttgaggattcccttgagtttgtcctgtgtgatagccatgaccctccc
aatctctcagagccacagctggtgatagtgcatattattcctgtggatgatcagcttcca
aaagaagcttctggggttacccgtcacctcgctgtcgaggaaactaagatagctcatcta
actaagaaacatctccatttcatagacatggaagcacaagagagagagctcatctacaca
gtaaccacctccccatttttctcttttactcatggcccctccgatgctgggaagttgttt
atggtggacagcatccccaagctagtcaaggatccttctgttccagcactgagatcattc
actcagcatgctgtgaactacatgaaagttgcctatatgccccctatccaggacattggg
cctgaacctcagcatgtccagtttattttttcagtcagcaatcagcatggaggcactttg
tataggatctgctttaatattacagttcttccagtggacaatcaagctccagaggtattt
acaaataacttgaaagtggaagaagggggactgtgcaccattacagggagccatattctg
atgtcagatgtggacacaaaacaggagaacctccacatctaccttcagaggctgccgctg
catggaatggtagaactggatggatttcccatgaacaaaggtgacaggttcacctgccag
gacttgcacatgttaaaagtcaggtatcagcatgatggctctgagactctgcatgatgac
atcctctttgcagccacagatggcattaattctttagagtttgtcctacaggtcaaggtg
ctacctgtaaatgatgagccacctatcatgaaagatggcctcattcccctaatacaatgt
ccagagggcgaggaagtggtcatcacctcagagtacatttatgccaccgatgcagacagc
gatgacatgaaactgacttttatgctggctcgacagccctattatggggttgtgaggaaa
gctggtatcgttgtggatcgcttctcccaagcggacgttgtctctagagtagtgacctac
aagcatactagtggggagattggcctgacgccttgttttgatacccttaccttggttatc
tctgatggtgaagctggcatggatgtgaatgactgctgttatgatggacttcttcctcct
ccagtaccacttcatgattcctttccagtatatgaccttaacatcagtgtatttccagtg
gacaaccagccaccatccattacaattggtgccatgtttgttgtggatgagggtttctca
gctgtcgttaccgctaacaatttgtttgctactgaccccgacaccgcagcagatgactta
gagtttgttttggtttctcctccccagtttggttacattgaaaatatagtaccttcccct
gggtttgagaagagcaacattggtataagtatagcttcatttcagctgaaacacctgaaa
gccttgcatataaattatgtgcagtccagacacgtgaggacagaaccaacttcagaccag
tttatgatttatgtcactgatgggaagcatcattcagtggagaccccattttatgtcctg
atcaacccaacaaatgatgaagtcccagaattcatagcaaggaacataactgtgcaggag
ggccaaatgaaagaactggatccctctgtaatcaacgttattgatctggatgtacctcaa
gatcgtttgatgtttaccattgtccagcaaccccagcatggattcctcattaatggagtt
tatggcaatgatgttatgaattacaaaagattcattaacagtcaccacaatcatgaacgt
cctgtgcatgacttttccatggagcttcttaagaatggaatgaggctggtgtacatgcat
gatgactctgaaaacctcactgatggttttacactccagctgtcagatgggaaacataaa
gtcctcagaaccattctggtaaaggtcatcccagttaatgacgagaagccaatgctgagc
aagaaggatgagatagaggtgaacatgggtgaaacccgaataatttctagtgctgttctg
tcagccgaagataaagacacctccagggacagaatttactatttatttgaaagaattcca
gaaaatgggcagcttcagctcaaggtaggtagggactgggtgacgctccaaactgaaatg
aagtgcacccaggaggaaatagatatgaaccttgtgagatatgtgcatacaggagctatg
gggtccaggaaccaagacagcttcacatttcatctgtgggatggggacaacaaatcccca
gcaatggacttctatataactatcaaggatatggaaaaaggggacattgctgtttttgtg
aggccacttactgtatctaagggggatagaggtttcttgacaactgatgttctccttgca
attgatggaactgagaaaccagaagagctcctctatgtgataacctcgccacctcagtat
ggacagatagagtatgccagctatcctggagtccctattacaagtttcagccaaatggat
gtagcaggtcaaacagtctgctatgtccacaatagcaaggcagctgctccccgagatctg
ttcagatttatcatcagcaatggactgaagactaaacacggaacgttcgagatcatgctg
gagacagtggaccaagctttgcccatagtgtctaggaacaaggggctaagattagtggaa
ggcactatggcactcctttctcctgatgtcctgcagctttcagatgcagacacttcctca
aagaaccttactttcctcttggcacagctccctcaatatggccatctgtgctaccgaggg
gctgtgctgctgcagcacaatttcactcagcaagatgtggacaacatggacatggcatat
agacacggaggaggggcttcccagattgacagatttacatttgttgcaacagataggact
aatgaaggcttcatcgtagatgggaaggtgcaaatggagcctgtggcattcaccattcag
gtggaccatttggacaaaactgcaccaaaaattgttcacctccattgttcttcagatgtg
gagctcctgaaaaatggcaattatgggatttacattactgccaggtccttgaaggcatat
gaccccgatacagaagaggaccaagtcatttttaagattttacgaggtcctcgttatggc
tacctggaaaatataacaacaggtggatttatccaggaaggattcagtcaaaaggattta
aatggcaaaatcatactttatgtcatcaatccatcctgggaggtgaattcagacagctta
gagtttcaagtcacagatcccaccggaaactctgctgccccgcaaactctggaactgagg
tggtctcaaattgaaatacaacaggctgagtacgtggtgtgtgagaatgtgggaatgttg
cctttgaaaatcaccagattggggcactccatggactctgcctttattgcagtgaaggtt
aatgaagtgactgctacattgggaaaggattttactgtgactccctctaagctcattcag
tttgatccaggaatgtcaaccaagacgtggaatatagcaattacctatgacggattagag
gaagatgatgaggtctttgaagtagttctgaactcccctgtgaatgcaattcttggcacc
aggacaaaagctgtagtgaaaattctggactcaaaaggaggtcaatgcagctctttccat
tcctctggccaaaacaagcacaacttatgggggacaggcgcattgcttccagtttcctca
ggctcctcatcgccctccaatcctggcactgttcacttggaagaaatcccgctgtcctct
tccaaagagatgatggtgcagagaggggatgtgttacaggaattcaacttgctgaatctg
tcaaggatgaggcttagagctgtcagaaatggcaaaatagtttatccttcatctgtgtta
agaaatggaaccaatgtggcttttaaatatcatggattggtctctctcagagtagaggat
gacacctcatcagctaatgcaaacaaggctaacaagtcaataattaaccaagggcggaca
aagataaatgtgatctcctccaggaagacggaagtcccacaagctgataaggcagagttg
atgtctgaatcacactctaaccaacaggacctggtcctctcctttccaaagagctgcaca
cctgatttagaggggctcttgcattttgaagaaagtacccaaaacttatttcagtgtgat
ggaatttcgtggaagttatggacttcaaaaagcaaggatgttagcatgaaaaaatgccca
tctggatggagccatcatggaggcagctgctatttcctgatcacagaccagaaagtcact
tggaatacagctgctcgggcttgccgggaacaataccttggaagtctagcaagtgtggtc
acgaaacaacatatgcagtggctgtgggacttcagtggaaggaaacccttttggataggc
tttaatgaccaagttaatcctggccattgggagtggcatggaggagaacctgtcaccttc
acaaactggagaagaagtccatctcgcctttcaaagcaaggaaagaattgtgttttggtg
cagaggcgagggaaatggcaagcaaaagactgtaggaagggtaataggcacaactatatc
tgctcaagaaagctgtaa
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integrated database retrieval system
