Trachemys scripta elegans (red-eared slider): 117879007
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Entry
117879007 CDS
T07347
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117879007 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117879007 (CNOT4)
03019 Messenger RNA biogenesis [BR:
tst03019
]
117879007 (CNOT4)
04121 Ubiquitin system [BR:
tst04121
]
117879007 (CNOT4)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117879007 (CNOT4)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117879007 (CNOT4)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117879007 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117879007 (CNOT4)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117879007 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
Rtf2
Nup35_RRM_2
DZR_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117879007
NCBI-ProteinID:
XP_034629725
LinkDB
All DBs
Position
1:84874267..85002361
Genome browser
AA seq
765 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDVPNSNNKDAWPSLQSSSKSANGLTMEH
RKTPPILENGTDPEHMTPDGPDSDFGPIDKPSDALSIGNGDNSQQITNSDTPSPPPGLSK
PNPVIPISSSNPSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAP
EPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQ
PSLSPTSLQNPSPHTTTAKGSGSGFLHPVAPSNANSLSSTFPVLPQRFPQFQQHRAVYNS
FSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLTLPPQHSTGLGGIPISDNSSSV
ESLNMKEWQDGLRALLPNININFGGLPNPSSPSNANHSVPTSNTATSDSLNWDSPGSWMD
PAIITGIPASTGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSNPFSTQIPLHR
ASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgcgaaggaagaccctgtggaatgccccctttgcatggagccc
ctggagattgatgacatcaacttcttcccttgcacctgtggctaccaaatttgtcgcttc
tgttggcaccgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcaaaggataaaaaat
gaaaagaaacagaagcaaaacgagaggaagcagaaaatatcagagaatcgcaaacatctg
gccagtgtacgggttgtacagaagaaccttgtctttgttgtaggactgtcacagcgccta
gcagatccagaggttttgaagcggccagaatattttgggaagtttggtaaaatacacaaa
gttgtcatcaacaacagcacatcatatgcaggctcacagggtccgagtgcaagtgcatac
gtaacctacatccgatcagaagatgctctcagagccatacagtgcgtcaataatgtggtg
gtagatggcagaacacttaaggcatctttaggtacaacaaaatattgcagttatttccta
aagaacatgcaatgtccaaaacctgactgtatgtatctacatgagctgggggacgaagca
gccagtttcacaaaagaggagatgcaggcgggtaaacaccaagaatatgaacagaagcta
ctgcaagaattgtacaaactaaaccccaacttcctccagctgtctacgggtacagttgac
aagaacaaaaacaaagtgacagcactgcagaggtatgatgtacccaacagtaataacaaa
gatgcctggccatcattacagagttcaagtaaatcagccaacggtttaacaatggaacac
aggaaaacgcctcctatattagaaaatggcacagacccagaacacatgactccagatggt
ccagactcagatttcggccctatcgacaaaccttcagacgctctcagtataggaaatggt
gacaactcacagcagataacaaacagtgacacaccttcaccaccacctggtttatcaaaa
cccaatccagtcatacccatcagttcatccaatcccagtgcgcggtctccttttgaaggg
gctgtaacagagtcacagtcgctcttctcggacaacttccggcaccccaaccccatccca
agcgggctccccccattccccagctctccacagacttccagtgactggcccacagcacca
gaaccacagagcctcttcacatcagaaaccatcccagtatcctcctctacagactggcaa
gcggcatttgggtttggctcctccaaacagcaagaggatgacttagggtttgaccccttt
gatatcacccgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccag
ccttccctctcgcccacatctcttcagaacccttccccgcacactacaaccgccaaaggg
tcagggtctggattcctgcatcctgttgcgccctcaaatgccaactctctcagtagcacc
tttccagtcttgccacagaggttcccgcagtttcaacagcaccgagcagtttacaactcc
ttcagttttccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatc
atgcacttgaaccacacagcaaatcccacctcaaatagtaatttcttggacttgactctc
ccgccacaacacagcacaggtctgggagggatccctatatcagacaacagcagttctgta
gagagtttaaatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaac
atcaactttggtgggctgcccaatccttcttccccctccaacgccaaccacagtgtacca
acgtccaacactgccacctccgacagcctgaattgggacagccctggcagctggatggac
cccgcaatcatcacagggatcccagcctccacaggaaacagtttagactcccttcaagac
gacaatccaccacattggctaaaatctcttcaagccctcacagagatggacggccccagt
gcagccccatcacagacccaccacagtaaccccttcagcacacagatccctctgcacaga
gccagttggaacccctactctcccccttcaaaccccaccagtttccactcccctccccca
ggctttcagacagccttcagaccccccagtaaaacccccacagatctactacagagctca
gcgctggatcgtcattag
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