Trachemys scripta elegans (red-eared slider): 117889277
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Entry
117889277 CDS
T07347
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03030
DNA replication
tst03410
Base excision repair
tst03420
Nucleotide excision repair
tst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117889277 (LIG1)
03410 Base excision repair
117889277 (LIG1)
03420 Nucleotide excision repair
117889277 (LIG1)
03430 Mismatch repair
117889277 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tst03032
]
117889277 (LIG1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117889277 (LIG1)
Enzymes [BR:
tst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117889277 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
117889277 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117889277 (LIG1)
DNA replication proteins [BR:
tst03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117889277 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117889277 (LIG1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117889277 (LIG1)
NER (nucleotide excision repair)
Other NER factors
117889277 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
117889277 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117889277
NCBI-ProteinID:
XP_034649115
LinkDB
All DBs
Position
16:complement(36989..59294)
Genome browser
AA seq
952 aa
AA seq
DB search
MQRPITSFFQPMKAVKEEEKIRLPAEEDSTSQVSEAAVPQRNGLSLCVDSPLKSTAKRPL
RRVLESDSDEEEAVLTAQAEVAPIQDKSSEKASSKQEPMQTPQSDLSADSPSPSSSHSAG
DSPALSDSPAIGHAGIPRRRTARKQIPKRKIELPTSRENNRHEEPSAKRCREEQGPGDEA
GRGAKEEDAMEMQEVKGQHSEIELAEVNGASEEGAVNKGEEDRAGGGAQEKPEPPKPSRA
ISSFFAPKKVPVAKAGKADERAAVKIPPAPTGSATVSSNGSDGTAGSFSKPAVPLDPVEY
NPSKSSYHPVQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPSD
ILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESS
RSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRSL
GGKLRIGLAEQSVLSAIAHAVSLTPPGQGFPPEVLDAGQGKSAEARKAWLEEQTQILKQT
FCELPSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCE
YKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVRSCILDAEAVAWD
PEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHESF
VETEGELMFATSMDTCSLDEISEFLDQSIKDSCEGLMVKTLEVDATYEIAKRSHKWLKLK
KDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLE
KHYSFLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEK
GISLRFPRFLRVRDDKKPEEATTSSQVAELYRQQQQIQNQQPAEKAEEEDFY
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcccgatcacgtcatttttccagcccatgaaggcagtgaaggaggaggagaag
atcagactgccagcagaagaggactcaaccagccaggtgtcagaggcagctgtgccgcag
agaaatggcttaagcctctgtgtggactccccattgaaatccactgccaagaggcccctg
cgtcgggtcttggagagcgacagtgacgaggaggaggctgtgctgacagcccaagcagag
gtggctcccatacaggacaaaagctcagagaaagctagcagcaagcaggagcctatgcaa
actcctcagtctgatctctctgcggatagcccctcaccaagcagtagccactccgctgga
gacagcccggccctttctgactcccctgccatcggccatgctggcatccccagacgcagg
accgctcgcaagcagatccccaaacgcaaaatagagttgccaactagcagggagaacaac
aggcatgaggagccgagtgccaagagatgccgggaagagcaaggcccaggagatgaggca
ggcaggggagcaaaggaagaagacgccatggaaatgcaagaggtgaaaggtcagcattcg
gagatagaactggctgaagttaatggcgcttcagaggagggggctgtgaacaagggagaa
gaggaccgcgctggagggggagcccaggagaagcctgagccacccaagcccagcagagcc
atctccagcttctttgcccccaagaaggtgccagtggcaaaggcagggaaggcagatgaa
cgtgcagcagtgaaaataccacctgccccaactggctcagccacagtgagcagcaatggg
agtgatggcacagctggcagtttctccaagccagctgtgccactggaccccgtggagtac
aatccttcaaagagcagctatcaccccgtccaggacgcctgctgggggcatggtcagagg
gtcccctacctggctgtggctcggacatttgagcgaatcgaggaggtgtctgcccggctg
aagaacattgagaccctgagcaacctcttccggtcagtgattgccctgtcaccatctgac
attctgccctgcatctacctctgtctgaaccgcctgggccctgcctacaagggactggag
ctgggcatcggcgagaccattctcatgaaggctgttgcacaggcaacaggccgccagctg
gatcagatcaaagccgaggcccaggagaagggggatctgggtttggtagctgagagcagc
cgcagcaaccagcgcaccatgttcacgccacccaagctgagtgctgccggagtcttcagc
aagctacaagagattgccaggatgacaggcagtgcttccatgaacaagaagatcgacatc
atcaaagggctgtttgtggcctgccggcactcggaagctcgctacatcactcggtccctg
ggcgggaagcttcggattgggctggcagagcagtcagtgctgtcagccattgcccatgcc
gtgtctcttactcccccaggacaagggtttcccccagaggtgctggatgctggccagggc
aaatctgcagaggcacgcaaagcctggctggaggagcagactcagatcctcaagcagaca
ttctgtgagttgcctagctatgacatcatagttcccatcctgctggagcatggagtggag
agcctgccacagcactgcaagatcaccccagggatcccgctgaagcccatgctggcccag
cccaccaagggcattggggaggtgctgaagcgctttgaggaggctgccttcacctgcgag
tacaagtatgatggggagcgagcccagatccacatcctggagaatggggatgtgcacatc
tacagccgcaaccaggaggacaacacctccaaataccctgacatcatcagccgcatcccc
aaggtgaagaagggcagcgtgcggtcatgtatcctggatgctgaggccgtggcctgggac
cccgagaagaggcagattcaacccttccaggtcctgaccacgcggaaacgcaaggatgtg
gaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctcaat
ggggagtccctagtgaaggagccattctccaggcgccgtcagctgctgcatgagtctttt
gtggagacagagggggagttaatgtttgccacctccatggacacctgcagcctggacgag
atctctgaatttcttgaccagtccatcaaagactcctgcgagggcctcatggtcaagacc
ctggaggtggatgccacgtacgagatcgctaagagatcccacaagtggctgaagctgaag
aaggattacctggaaggtgttggtgacactctggacttggtggtgattggtgcctatctg
ggcaagggcaagcgagtaggcatgtatggcggcttcctgttggcctgctatgatgaggag
agtgaggagtaccagagcatctgcaagattgggactggattcacagaagagagcctggag
aagcattacagcttcctgaaggaccatgtgctagagaagccacggccctattaccgctgg
gacagcagcactgaacccaaccactggctggcggctgtgcaggtgtgggaagtgaagtgt
gctgacctgtccatctcgcctgtgcacaaggcagctataggcctggtggatgaggagaag
ggcatctccctgcgctttccccggttcctgcgcgtgcgtgatgacaagaagcctgaggaa
gccaccaccagttcccaggtggctgagctctacaggcagcagcagcagattcagaaccag
cagcctgcagagaaagctgaggaggaggacttctactag
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