Treponema succinifaciens: Tresu_1252
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Entry
Tresu_1252 CDS
T01461
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsu
Treponema succinifaciens
Pathway
tsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tresu_1252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsu03400
]
Tresu_1252
Enzymes [BR:
tsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tresu_1252
DNA repair and recombination proteins [BR:
tsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tresu_1252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
IstB_IS21
RC-P840_PscD
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEB14160
UniProt:
F2NRS4
LinkDB
All DBs
Position
complement(1338743..1342483)
Genome browser
AA seq
1246 aa
AA seq
DB search
MKNTLSTKSQNPLFSLINSCTEFHSAAIKCADAKPEEFPLQISGLKGSLPSFFIRQTEER
YRQNCIHKTQYENKFFQFQKDIVIIVPTQKEADECETDLNTVFEDSVEIFKFPWWGTIPY
RAAAKGSAVFGERAGILAKLAVKNPFSEKTRIFIITQRAFLTPVPPASYTKTLVTVLKKG
QEFDPEKLAEKLTEQGYLRVPKIGMKGEFVLRGEVLEIFMSGEKYAHRIVFDFDTISQIK
LFDSETQTSKENIEHLVIYPQKEIIWTEEFIEKLESEWKKEDEAGIKNDFALYDKAKKQS
TNEHSAEVNKNKTDKSQANEQSDINKNEAGIKNNTNNRLLDKKNIHLALTGAAKQEKDRT
LAELIEFKETEGEELYYPVLFDKLYSILDYLTNNTDVYFFDWDRLVNAEKMLENEYTVAY
RLERQNLPVFPPATMQLDFFNLAIECKKLVAFRTLDTLSNSEENIQDKSVSFNTSLEIKS
QAGQSYFGNINYLKEQLSSFLKEKYNIFVFADNGNQTLRIKEIIKEFCDSGVQVLPQALT
AGFMFSDEKLLVIQENEIFGRKKNTPKSIRKVNSKPIDTFVDLTPGDYIVHVNYGIGLFK
GIERVKAMGTERDYIKLEYADEEIAFVPIEQVNMVQRYIGSENEKPRLDRIGSKNWSARK
AKVQQKVEEIAEKLIDLYSKRQASRGFPFPKDTEWNAAFEAAFPYEDTPDQFSATQEIKA
DMEKPVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHFENSQERFK
NFPVTIAQLSRFVSPTEQKKIISKIASGEIDIIIGTHRILQKDVIFKNLGLMIIDEEQRF
GVKDKEKLKTLKTNIDCLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETAIEEYN
DEKVARAIRNEVQRGGQVFYLHNRVETLEETRLKLENLVPEMLVETAHGKMTSEELDDIF
RRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAYAYL
FYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSGEVYAVGFEM
YLTLLNSAIERLSNSDWTAPEEVLLELEYTGFIPDTYIKDTQTKMELYKKIASVQTQDSL
NSVWEELFDRFGPIPDEVSSLLSLAKIRIICNKLSISSLKEKKGIVQVEFSKVSKVNIDK
LLGLIKTSSGRVKLNSAKPNQIILQTEAIDLKSKSEFIKEKLEQLI
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacattatcaacaaaaagtcaaaatccgctttttagccttattaattcctgc
actgaatttcactcggccgcaataaagtgcgcagacgcaaagccagaagaatttccgctg
caaatttcagggctaaagggaagtcttccgtctttttttatcaggcaaacagaagaaagg
tacagacagaactgcatccataaaactcagtatgaaaataaattttttcagtttcaaaaa
gatattgttataattgttccgactcaaaaagaagctgacgaatgtgaaacagatttaaat
acagtttttgaagattccgtagaaatttttaagtttccttggtggggaacgattccttat
agagctgcggcaaaaggctcggctgtttttggagaaagagctggaatccttgcaaaactt
gcagtaaaaaatccattttctgaaaaaacaagaatttttataataacgcaaagagctttt
ttaactccagtcccgccggcttcatatacaaaaacgttggttacagttttaaagaaaggc
caggaatttgaccctgaaaaacttgcggaaaaactaacagagcagggctaccttagagtt
ccaaaaatcggaatgaaaggcgaatttgttttgcgtggtgaagtcctagaaatctttatg
agcggagaaaaatatgcgcacagaattgtatttgattttgacacaataagccaaataaaa
ctttttgattcagaaactcagacttcaaaggaaaacatagagcatcttgtaatttatccg
caaaaggaaattatttggacggaagagtttattgaaaaactagaaagtgaatggaaaaaa
gaggatgaagccggcataaaaaatgattttgccctttatgataaagcaaaaaaacaatca
acaaacgaacattcggcagaagtaaacaaaaataaaactgacaaatcacaagctaacgaa
cagtcagacatcaataaaaacgaagcaggaataaaaaacaacactaacaatcggttgtta
gacaaaaaaaatatacatctcgctcttacaggtgccgcaaaacaagaaaaagacagaacg
ctcgccgaacttatcgaattcaaagaaacagaaggcgaagaattgtattatccggttcta
tttgacaaactgtattcaattttagactacttaacaaacaatacagatgtttattttttc
gattgggacagacttgtaaatgcagaaaaaatgctagaaaacgaatatacggtggcatac
aggctcgagcgtcaaaaccttccagtgtttccgccagcaaccatgcagcttgattttttc
aatctggcaatagaatgtaaaaaacttgttgcattcagaactttagacacgttaagcaat
tcggaagaaaatattcaagacaaatccgtttcattcaacacatcgctagaaataaaatca
caagcagggcaaagttatttcggaaacataaattacttaaaagagcaactttcatcattt
ttaaaagagaaatataacattttcgtttttgctgacaatggaaaccagactttaagaata
aaagaaattataaaggaattttgcgattctggagttcaagttcttccacaggctttaaca
gccggatttatgttttctgacgaaaaactccttgttatccaggaaaatgaaattttcggg
cgcaagaaaaacacgccaaagtcaatcagaaaagtaaattcaaagccaatagatacgttt
gtcgatttgactccgggagattatattgtccacgtaaattacggaatcggacttttcaag
ggaatcgagcgcgtaaaagcaatgggcacagaacgtgactacataaaacttgaatacgca
gacgaggaaattgcttttgttcctatcgagcaagtgaatatggttcaacgttatataggg
agtgaaaacgaaaaaccaaggctcgaccgaatcggctctaaaaactggagcgcaagaaaa
gcaaaggttcagcaaaaagttgaagaaattgcagaaaaactgatagatctgtactcaaaa
cggcaggcttcacgtggctttccgtttccaaaggatacagaatggaacgcagcatttgag
gcagcctttccttacgaagatactcccgaccagttttcagcaacgcaggaaatcaaagcg
gacatggaaaagccagttccaatggatcggcttgtatgcggagatgttggttacggaaaa
actgaaattgctatgcgcgcggcattcaaggcagtaatgggcggaaaacaagtcgcattt
cttgcgccgacaacaattcttgcagagcagcattttgaaaacagccaggaacgcttcaaa
aattttccagttacaatcgcgcagctttcaaggtttgtttctccaacggaacaaaaaaag
ataatttcaaaaattgcaagcggagaaatagacattattataggtacacaccgaattctg
caaaaagatgtcattttcaaaaatctagggctgatgataattgatgaagagcaacgattc
ggcgtaaaggacaaagaaaagctaaaaacattaaaaacaaacatcgactgccttgcaatg
agcgcaacgccaattccgcggacgctgcacatgagccttttaaaaatccgggatatgtcg
cttcttacaacaccgccacaaaacagacagccaattgaaactgctattgaagaatataac
gatgaaaaagtcgccagggcaataagaaacgaagttcagcgcggaggacaagttttctac
cttcacaatagagttgaaactcttgaagaaacaagactgaaacttgaaaaccttgttcca
gaaatgctagttgaaaccgcgcacggaaaaatgaccagcgaagaactagacgatattttt
agaagatttaagatgggaggatttcatattctggtggcaactacaataattgaaaacgga
atagacattccaaatgtaaacacaataataatcgaccgcgcggatatgtacggagtaagc
cagctttatcagttgcgcggacgtgtagggcgaagcgacagaaaagcttatgcatatctt
ttttatccgcagaacaaagctttaagcgaagttgcaatgaaaagacttcaagtaataagc
gattttacagaactggggtcaggatttaaaattgcaatgaaagacatggaaattcgaggc
gcaggaaatcttcttggaaaagaccaaagcggtgaagtttatgcagtcggatttgaaatg
tatttaacgcttctaaattccgcaatcgaaagactttcaaacagcgactggacagcgcca
gaagaagttctgcttgaacttgaatacacaggatttattccagacacctacataaaagac
acacagacaaaaatggagctttacaaaaaaatcgcatccgttcaaactcaagattcctta
aattcagtctgggaagagctttttgatagattcggaccgattccagatgaagtaagcagc
ctgctaagccttgcaaaaatccgcataatctgcaacaaactatctataagctctttaaaa
gagaaaaaaggaattgtccaagttgaattcagcaaagtttcaaaagtcaacattgacaaa
cttctaggactgataaaaacaagttcagggcgcgtaaaactaaattcagcaaaaccaaat
caaattatcttgcaaaccgaagcaatcgatctaaaaagcaaaagtgaattcataaaggaa
aaacttgagcaattgatttaa
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