Terricaulis silvestris: DSM104635_00281
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Entry
DSM104635_00281 CDS
T06781
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tsv
Terricaulis silvestris
Pathway
tsv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM104635_00281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsv03400
]
DSM104635_00281
Enzymes [BR:
tsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM104635_00281
DNA repair and recombination proteins [BR:
tsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM104635_00281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGZ93471
UniProt:
A0A6I6MIE1
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All DBs
Position
complement(283397..285856)
Genome browser
AA seq
819 aa
AA seq
DB search
MAKKSVKAGDTVGDLVEYNRKRDFKKTSEPAGGNLKDAGGMFVVQKHAATRLHYDFRLEH
GGVLMSWAVPQGPSLDPSVKRLAVRTENHPIEYGSFEGVIPKGEYGAGSVIIWDTGKVKW
LLDPDVGMAKGELKFVLAGERLKGEFHMVKIKPREGERGNPWLLFKSKDAFAGKEDPVAR
SVTSIVSGRTIEDVRSGGARVWSKGGERAPKAAKPPRWPFVEPALATRVEKAPPGDNWIH
EIKYDGYRIQAAVSGDSVKLFTRTGLDWTGKFQPIADALAALNLKDVLLDGEAAVAQANG
KTDFSALQASLENGVAKGVSYFVFDLLAQGTKDLRKTPLSERKEILDELLSKAKAPIRVS
PYFEGGGPQVLEAFQEKGLEGVVSKKASSTYQSGRTNAWLKVKLVNEQEFIIIGYQPSAR
GRQFASLMLADKVDGKLQYRGNVGTGFNDKTLASIYEKLSRIERAKPALTVPREAAKGAK
WVEPKLVAQVKFAEFTSEGAVRHGVFLGLRGDKPAKDVTSEQAAPAMKTRVRLTHPDKVL
FPESGVTKAELAAYLDMAADRMGPHLYGRPVSLVRAPDGVGKQTFFQKHAMKGMPDDIKL
IPITESDGKPEEYLTLPNATAIVSAAQISALEFHLWGSRNDDLEHPDRMVFDLDPDEGLD
FEIVKRAAFDIKALLESADLPSFAMITGGKGIHIVLNLKRKHTFDEIKEFSGAVADQIEA
LDPKRFVANMSKAKRKGRIFVDYLRNGRGATAIAPYSPRARGTAPIAVPVTWTELKTIPS
ASVFKIKDMSARLAEPDPWADYAKNAVQITKAVRGKLGL
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagtctgtaaaggcgggcgacacagtcggcgatctcgtcgagtacaaccgc
aagcgcgacttcaagaagacgagcgaaccggccggcggcaatttaaaggacgccggcggc
atgttcgtcgtgcaaaagcacgcggcgacgcgactacactacgatttccggcttgaacac
ggcggcgtgctgatgagctgggcggtgccgcaaggcccctcgctagatccgtcagtgaaa
cgcctcgcggtgcgcaccgagaaccatccgatcgagtacggctcgttcgagggggtgatc
cccaagggcgaatacggcgccggctcggtgatcatctgggacaccggcaaggtgaaatgg
ttgcttgatcccgacgtcggcatggcgaagggcgagttgaaattcgtgctggccggcgag
cggctcaaaggcgagtttcacatggtcaagatcaagccgcgcgaaggcgagcgcggcaat
ccttggctgctgttcaaatcgaaggacgcgttcgcggggaaggaagatccggttgcgcgc
agtgtgacgagcatcgtgtcggggcgcacgatcgaagacgtgcgctcgggcggcgcgcgg
gtttggagcaagggcggcgaacgcgcgccaaaggcggcgaaaccgccgagatggccgttc
gtggagccggcgttggctacgcgcgtcgagaaggcgccgccgggagacaactggatccac
gagatcaagtacgatggctaccgcatccaggccgcggtgagcggcgatagcgtgaagctg
ttcacgcgcacggggctggattggaccggcaagtttcaaccgattgccgatgccctggcg
gcgctcaatctgaaagacgtgttgctcgatggcgaagcggcggtagcgcaagccaacggc
aagaccgatttctcggcgctgcaggcgtcattggagaacggcgtcgccaaaggtgtctcg
tacttcgtgttcgatctgctggcgcaaggaacgaaagacctgcgcaagaccccactgagc
gagcgcaaggaaattctggacgagttgctctccaaggccaaagcgccgatccgcgtcagt
ccctatttcgaaggcggcgggcctcaggtgctagaggcgtttcaggaaaaaggcctggaa
ggcgtcgtctcgaagaaagcgagctctacgtatcagagcgggcggaccaatgcctggctc
aaggtgaagctcgtgaacgagcaggagttcatcataatcggctaccagccgtcggcgcgt
gggcggcagtttgcgtcactgatgctggcggacaaggtggacggcaagctgcagtaccgc
ggcaacgtcgggacggggttcaacgacaagacactggcgtccatctacgagaagctttcg
aggatcgagcgcgccaagcctgcgctgaccgtgccgcgcgaagcggcgaaaggcgcgaag
tgggttgagccgaagctggtggcgcaggtgaagttcgcagagttcaccagcgaaggcgcg
gtgcggcacggcgtgtttctcggattgcgtggcgacaaaccggcgaaggatgtgacctcc
gagcaggcggcgcccgcaatgaagacgcgtgtgcggctgacgcatccggacaaagtgctg
tttcccgaaagcggtgtcaccaaggcagagctggcggcgtatctcgatatggcggccgat
cgcatggggccgcatctctatgggcggccagtgagtttggtgcgcgcgccggacggcgtg
ggcaagcagacgttcttccaaaagcatgccatgaaaggcatgccggacgacatcaagctg
atcccgatcaccgagagcgacggcaagccggaagaatatctcacgctgccgaacgcgacg
gcgattgtctcagcggcgcagattagcgcgctcgagtttcacctgtggggctcgcggaac
gacgatctcgagcatccggatcgtatggtattcgacctcgatccggacgagggcctcgac
tttgagatcgtcaagcgtgcggcgttcgacatcaaggcgctattggaaagcgccgatctg
ccctccttcgccatgatcaccggcggcaagggcattcacattgtgctgaatttgaagcgc
aagcacacgttcgacgagatcaaggaattctctggcgcggttgccgaccagatcgaagcg
ctcgaccctaagcgcttcgtcgccaacatgtcgaaggcgaagcgcaagggacgcatcttc
gtcgactatctgcgcaacggccgtggcgcgacagcgattgcaccgtactcgccgcgcgcg
cgcgggactgcgccgatcgcggtgccggtaacgtggacggagttgaaaacaattccgtcg
gcgtcggtgttcaagatcaaggacatgagcgcacgcttagcggagcccgatccatgggcg
gactacgccaagaacgcagtgcagatcacgaaagcggttcggggcaagttaggactctag
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