Pseudothermotoga thermarum: Theth_0710
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Entry
Theth_0710 CDS
T01554
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tta
Pseudothermotoga thermarum
Pathway
tta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Theth_0710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tta03400
]
Theth_0710
Enzymes [BR:
tta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Theth_0710
DNA repair and recombination proteins [BR:
tta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Theth_0710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SecA_DEAD
UB2H
AAA_30
AAA_16
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEH50795
UniProt:
F7YXZ5
LinkDB
All DBs
Position
complement(708872..711706)
Genome browser
AA seq
944 aa
AA seq
DB search
MTLDKLFEDLQSDCILIVVPTEYDAQKLADHFGFDYFPSHDVFPFENVDVSFFVRSARIK
TLWKILFFQKAKVVSTLHAITRKTLSPEVLRKHCFQITIGQELKEIDFEKLLYLMGYERT
FLVRSGGEYAIRGDILDFFGPLQNIPVRVEFFGRKVESIRIFDPATQRSIDSIKEVTILP
VREYISENHDLDTIPGKAMSNSTILDYAKFEVVFVNYKKCQEEYVKREKEIREILTDQQM
EEYQLYSQVPLSQILEKISNPIFVEADLDKLKTVKIQTSAVSQIPVVDEEELVEGDYVVH
VDYGIGIFEGVRRISNVFGTKEYLCIKYEDSTVYVPVERLDRVQKYIGDKGKVKIDKIRL
STWNKRLEKVKKDVREKIQELVELYFKRQQVTGLSLKGDPDLETEFAKTFPYVETEDQMK
AIEEVLEDLASDKPADRLICGDAGFGKTEVALRAAFRCVVSGKQVAVLAPTTVLARQHYE
TFKSRMEKFSVSVKLLDRTISQKERKQILFDLKSGKIDVIVGTHSLLSDKVKFFDLGLVI
IDEEQNFGVEQKEKFKKMRLNVNIISMSATPIPRTLHMALSGMKDLSVLNTPPQGRLPVI
TYVGKYNDLLVRSAVLREVNRGGQVIYVHNRVNDLERIFRHLQELIPEVKMVMAHGQMSS
SKLSKAVRMFYEHEVDMIVCTSIIENGVDVPTANTLIVDDSYRYGIAQLYQLRGRVGRSD
KRGFAYFLYDVEPSPSAKYRLKALEAFKGAGSGLQLAMLDMQMRGIGSIFGFEQHGNINS
VGLSLYLEILNREIKQALSLQTYEPVLEEENRIDVEIEGIPGELVIPESYVANPMERMRL
YRKLAACRDLKEIEEVRNELLDRFGKIPQQVNLLLDLFKIRILSHKVGLKKISYDGETLK
ITGASALKQIKLNKKHIYNEKEDCLLIYGVEPQEVLKILHQFLE
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
ttgacgctggataagctttttgaagatcttcagtcagattgcattctcatagttgtacca
accgaatacgatgcacaaaaacttgctgaccactttggttttgattactttccatcccac
gatgtttttccttttgagaatgttgacgtctctttctttgttcgttctgccagaatcaaa
actctttggaaaatattgtttttccaaaaggcaaaagttgtttcaactttgcacgcaatc
acaagaaaaactctctcacctgaggtgttgagaaaacactgttttcaaataaccatcggg
caagagttgaaagaaatcgacttcgaaaaactgttgtacttaatgggatacgaaagaact
ttccttgttagaagtggtggtgaatacgcgatcagaggtgacatactggattttttcggg
ccacttcaaaacatcccagtgcgcgtggaattttttggaagaaaggtagagagcattaga
atcttcgatcctgcaacacaaagatcgatagattcgatcaaggaagtcacaattttacca
gtcagagaatatatcagcgaaaaccacgatcttgatacaatccccggcaaggcaatgtca
aattccaccatacttgattacgccaaatttgaggttgtttttgtaaattacaaaaagtgc
caggaggagtatgtaaagcgcgaaaaggaaataagagaaatactaaccgatcaacaaatg
gaggaataccagctttattcgcaagtgccgctttcccaaatcctagaaaaaatatcaaat
cctattttcgtcgaagcagatcttgacaaattgaaaacggtcaaaatccaaacctccgca
gttagtcaaatcccagtggttgacgaggaagaacttgtcgaaggagattacgttgttcat
gtcgattatggaataggaatctttgaaggtgtgagaagaatttcaaacgtatttgggaca
aaagagtacctttgcatcaaatatgaggattcaacggtttacgttcccgtcgaaaggttg
gatcgagttcaaaagtacataggcgacaaaggtaaggtcaaaatagacaaaattcgtctc
tctacttggaacaaaaggttggaaaaggttaaaaaggatgttcgtgaaaaaatacaagaa
cttgtggaactttactttaaaaggcaacaagtgacaggtttgagtttgaaaggtgaccca
gatttggaaaccgaattcgcaaaaactttcccatacgtggaaaccgaagaccaaatgaaa
gccatcgaagaagttcttgaagatcttgcaagtgataaacctgcagatcgtttgatctgt
ggcgatgcaggctttggtaaaacagaggtagctttgcgagcggcatttcgttgcgttgtt
tccggtaagcaagttgcagttcttgcaccaacgacggttttggccaggcagcactacgaa
acttttaaatccagaatggaaaaattcagcgtctcagtaaagcttctcgatagaacgata
agtcaaaaggaaaggaagcaaatcctttttgaccttaaaagtgggaaaatagacgtcata
gttggaactcattctttgctttcagacaaggtgaaatttttcgaccttggtcttgtgata
atagatgaagaacaaaatttcggagttgagcagaaggaaaaattcaaaaagatgaggttg
aacgtgaatataatttcaatgagtgctaccccaattccaagaaccctgcacatggctttg
tctggcatgaaggatttgagtgttttgaacactcctcctcaaggaagacttccagttata
acctacgtgggtaagtacaacgatcttttggtcagaagtgctgttcttagagaagtcaac
cgcggtggccaagtgatctacgttcacaacagagtaaacgatttggaaaggatattcaga
catcttcaagaactcattccagaagtcaagatggtcatggcacatggtcaaatgagcagt
tcaaaactttcaaaagcagttaggatgttctacgagcacgaagttgacatgatagtttgc
acatcgataatagaaaacggtgtggacgtaccaacagccaacactttgatagtagacgac
tcttacagatacggaatagcacaactttatcagctaagaggaagagttggaagaagtgac
aaaagggggtttgcctattttttgtacgatgttgaaccaagtccaagcgcaaaatacagg
ctcaaagctttggaagcttttaaaggggctggtagtggtttgcaactcgccatgttggac
atgcaaatgagaggtattggttctatcttcggttttgaacagcatggtaacatcaattca
gttggactgagcctttaccttgaaatattaaatcgtgaaatcaagcaagctttatcgttg
caaacttatgaacctgttctagaggaagaaaacagaatcgatgtggaaatagagggcata
cctggtgaacttgtgataccagaaagttacgttgcaaatccgatggaaagaatgagactt
tataggaaacttgcagcatgcagagatttgaaggaaattgaagaagtaagaaacgaactt
ttggatagatttggtaaaataccacagcaggtaaacctcttgctggatttgtttaaaata
cgcattttgtcacataaagttggcttgaaaaagataagctacgatggcgaaactttgaaa
ataacgggtgcatcggctttaaaacaaataaaattgaacaaaaagcacatttacaacgaa
aaagaagattgcctactgatctacggcgttgaaccacaggaagttttaaagattcttcat
cagttccttgagtga
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