Thalassospira tepidiphila: MACH01_17740
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Entry
MACH01_17740 CDS
T09750
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MACH01_17740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttb03400
]
MACH01_17740 (mfd)
Enzymes [BR:
ttb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH01_17740 (mfd)
DNA repair and recombination proteins [BR:
ttb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MACH01_17740 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
AAA_16
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDW89007
LinkDB
All DBs
Position
complement(1981776..1985273)
Genome browser
AA seq
1165 aa
AA seq
DB search
MNKLKEIISTNGRKRVGGVPEGADALILRELLDSAGKNKTVLHVARDDKRMAQLAEALQF
FAGEIEVLTLPAWDCLPYDRVSPISEVTARRVETLTTLADSKESAAGNGRIVLTTAAAAM
QRVPTVEVMRKGKLAFKAGSEYDRAELTAYFERMGYNRAEQVMEPGDYAVRGDIVDIFAP
GMKEPVRLDFFGDEIESIRRFDVETQRTVGKVKEISLLPVGEVYLDPDSISRFRSSYREL
FGAVSQTDPLYESISNGLKYGGMEHWLPLFHDGLDTIFAYVPETIISLDYQYGEVIENRL
EMIDDYYQARLNIKGGGLSGDNVYKPVPPERLYLDQAEFDRMLSDRPVLEFSPYYDDENP
ERGIYDLGARAGRDFGDVRARADVNLYDELRDFITTQRGKENQVVIAAYSDGSRDRIVSL
LREHGVGKVVTCECWEDVTDDLTFEHVGVVILDIERGFRRKGLWFVTEQDILGDRMSRPG
GRRRKADNFLREASEISEGDLVVHLEHGIGRYLGLKTVTAGGAPHDCLELEYDGGDKLFV
PVENIEVLSRYGSDEGISILDKLGGVAWQARKAKLRERIRDMAGKLIKVAAERHLRKGAM
LQAPEGAYDEFCAGFPFAETEDQARAIRDTLDDLSAGKPMDRLVCGDVGFGKTEVAMRAA
FAAVMSGKQVAVVAPTTLLCRQHYLNFKERFEGLPVRVEQLSRLVTGKNAKLVKENLESG
HVDIVCGTHALLGTGVHFKDLGLLIVDEEQHFGVKHKERLKELKSDVHVLTLTATPIPRT
LQLALTGVKELSIIATPPVDRLAVRTYITPYDPVVVREAILRERHRGGQIFYVCPRVNEL
DRVAKELQNLVPEIKFDVAHGQMGARDLEQVMTDFTDRKFDLLLATNIIESGIDVPNANT
MIIHRSDMFGLAQLYQLRGRIGRSKQRAYAYLTLPNGKKLTATALKRLEVMQTLDSLGAG
FNLASHDLDIRGAGNLLGEEQSGHIKEVGIELYQQMIEEAVAEAKGEIDASEEASFVPQI
NIGMPVLIPDRYVPDLGVRLGLYRRISELRSREEVDQFAAEMIDRFGKLPKEVENLLDVV
TIKQWCRVANIEKLDAGPKGALITLRNNEFPNPAGLIGFIQQQVGVARLRPDHKIVYSAG
WDGPTDRLEGLKRLMKRLSDIAGNA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaagctcaaagaaattatatcgaccaacggtcgcaaacgggtaggcggtgtgccg
gaaggcgcagacgccctgatcctgcgtgaactgcttgatagtgcgggcaagaacaagacc
gttcttcacgtcgcacgcgatgacaagcgcatggcccaactggccgaggcattgcaattc
tttgccggtgaaatcgaagtcctgacgctgccggcttgggattgcctgccttatgaccgt
gtttcaccgatttcggaagtcaccgcacggcgcgtcgaaacgctgacaacccttgccgac
agcaaggaatccgctgccggaaatggccgtatcgtcctgacaaccgccgccgcggcaatg
cagcgtgtcccgaccgttgaggtcatgcgcaaggggaagctggcgttcaaggctggcagt
gaatacgaccgcgccgagctgaccgcctatttcgagcgcatgggttataaccgcgcagaa
caggtgatggaaccgggcgactacgccgtccgtggtgatattgtcgatatctttgccccg
ggcatgaaggaaccggtgcggcttgatttctttggtgacgagatcgaaagcatccgtcgc
tttgatgtcgaaacccagcggacagtcggcaaggttaaggaaatttcccttttacccgtg
ggcgaggtctatcttgacccggatagcatttcgcggttccgaagcagctatcgcgagctg
tttggcgcggtgtcgcagaccgatccactttatgaatcaatttccaatggcctgaaatac
ggcgggatggaacattggctgccgctgtttcatgacgggttggatacgatattcgcctat
gtgcccgaaaccatcatcagccttgattatcaatatggcgaggtcatcgaaaaccggctt
gagatgatcgacgattactatcaggcacgccttaatatcaagggcggcgggctatcgggc
gacaacgtctataaaccggtgccgccagaacggctgtatcttgaccaggcagagtttgac
cgcatgctgtcagaccgcccggttctggaattctcgccttattacgatgatgaaaatccc
gaacgcggcatttacgatcttggcgcacgggcagggcgtgattttggtgatgtgcgtgcg
cgtgcggacgtcaatctgtatgacgaactgcgtgatttcatcaccacacagcgcggcaag
gaaaatcaggttgttatcgcagcctattccgatggatcgcgtgatcgcatcgtgtcattg
ctgcgcgagcatggcgtgggcaaagtcgttacctgcgaatgctgggaagacgtgaccgac
gacctgacctttgaacatgtcggcgtggtgatcctcgatatcgaacgtggtttccggcgc
aaggggctttggtttgttaccgaacaggatatccttggcgaccgcatgagccgcccgggt
gggcgccgtcgcaaggcagacaatttcctgcgcgaagcgtccgagatttccgaaggcgac
cttgttgtccaccttgaacacggtatcgggcgttatctgggcctgaaaaccgtgacggcc
ggtggcgccccgcatgactgtcttgaacttgaatatgatggcggcgacaaactgtttgtc
ccggtcgaaaatatcgaggtgctgtcgcgttatggatcggacgaaggcatctcgatcctt
gataagctcggcggtgttgcctggcaggcccgtaaggccaagctacgcgaacgcatccgt
gacatggcaggcaagctgatcaaggttgccgccgaacggcacctgcgcaagggcgccatg
cttcaggcacctgagggcgcttatgacgagttctgcgccggcttcccgtttgccgagacc
gaggatcaggcacgcgcgatccgcgatacccttgatgacctgtcggctggcaagccgatg
gatcgtcttgtctgcggcgatgttggctttggcaagacagaggtcgccatgcgtgctgcc
tttgcggccgtcatgtcgggcaaacaggtggctgtggtggcgccgacgacacttctttgt
cgacagcattacctgaatttcaaggagcgctttgaaggcctgccagtgcgggtcgaacag
ctatcgcgccttgtcactggcaagaacgccaaactggttaaggagaacttagaaagcggc
catgtcgatatcgtctgtggcacccatgcgcttttgggtacgggcgtgcatttcaaggac
cttggccttctgatcgttgacgaggaacagcatttcggcgtcaagcataaggaacgcctc
aaggaactgaaatccgatgtgcatgtcctgaccctgacagcgacaccgatcccgcggacc
ttgcaactggccctgaccggggtgaaggaactgtcgatcattgccacaccgccggtcgac
cgtcttgcggttcggacctatatcacgccatatgacccggttgtcgtgcgcgaggccatc
ttgcgcgaacgtcaccgtggcggccagatcttctatgtttgtccgcgtgtcaatgaactc
gaccgggttgctaaggaacttcaaaaccttgtgccggaaatcaagtttgacgtggcacac
ggccagatgggcgcgcgtgaccttgaacaggtcatgaccgatttcaccgaccgtaagttt
gatctgttgcttgcgaccaacattattgagtcgggtattgatgttccaaacgccaacacg
atgatcattcaccggtccgacatgttcggtttggcgcagctttatcagttgcgtggccgt
attggtcgttccaagcagcgtgcctatgcctatctgaccttgccaaatggcaagaaactg
acggcaacagcactcaagcgcctggaagtcatgcagacccttgacagtttgggtgccggg
ttcaatctggcgagccatgatcttgatattcgcggggcagggaacctgcttggtgaagag
caatccggccatatcaaggaagtcgggatcgagctttatcaacagatgatcgaagaagcc
gtggcagaagccaagggcgagatcgatgcatctgaagaggcaagcttcgtcccgcagatt
aatatcggtatgccggttctgatcccggatcgttatgtgccggatcttggtgtgcggctt
ggtctttatcgccgtatttccgaattgcgatcgcgtgaagaggtcgaccagtttgccgcc
gaaatgattgaccggtttggcaaattgcccaaggaagtcgaaaaccttctggatgtggtg
accatcaaacaatggtgtcgggtcgccaatatcgagaaacttgatgcgggcccgaaaggg
gcactcatcacgcttcggaataacgagttcccgaacccggccggtttgatcggcttcatc
cagcaacaggttggtgtcgcccgcctgcgcccggaccacaagatcgtctattccgcaggg
tgggatggtccgactgaccggcttgaaggcctcaaacgattgatgaaacggctttcggat
atcgcaggaaacgcataa
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integrated database retrieval system
