Thiohalobacter thiocyanaticus: FOKN1_2117
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Entry
FOKN1_2117 CDS
T05229
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttc
Thiohalobacter thiocyanaticus
Pathway
ttc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOKN1_2117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttc03400
]
FOKN1_2117
Enzymes [BR:
ttc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOKN1_2117
DNA repair and recombination proteins [BR:
ttc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOKN1_2117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAZ94497
UniProt:
A0A1Z4VS91
LinkDB
All DBs
Position
2221038..2224520
Genome browser
AA seq
1160 aa
AA seq
DB search
MNRNTAPAPAPDKPFDPRHPPLPEAGACLRWGRLFGDSLALALAAAARDYAGPVVLVTPD
MPQLEQLQGQLGWFSGGDLERLSFPDWETLPYDAFSPHQDIISQRIETLYRLPDFHQGVL
ILPVSTLMQRVAPLSYIQGRGLSVKVGERLDVEAMRARFEQAGYTCVAQVMEHGEFAVRG
SLLDIYPMGSELPYRLDLFDDEVESIRTFDPDSQRSIEKVEAIHLLPAREFPFDPDAVSR
FRQAWRARFEGDPQRSAVYRDVSQGISPNGIEYYLPLFFEQTASLLDYLPADCLFLQLPG
CDAAAQDFWQQLEARHDQYRHDLERPVLAPDQLYLGLDELERHLAASRRVEILRFDEGAA
EIVNFATCGLPDVSLKPRATQPAEQLMQFLDQHPGRVLITAESAGRREHLLDSLRDNGLR
PTPVEGWQAFLDSDARLAIAVAPLEQGLRLEDGTLALLTETQLLGRRASQISRRKPARDP
EAIIRDLTDLAVGAPVVHEELGVGRYLGLQKLTAGGLENEFLTLEYAGGDKLYVPVNSLH
LISRYTGSSPETAPLHKLGTDHWAKAKRKAAEKARDVAAELLDIYARRAARQGHSFDIHS
DEYRQFAAAFPFEETPDQEQAIEAVLADMAAPQPMDRVVCGDVGFGKTEVAMRAAFVAAT
SGQQVALLVPTTLLAQQHYENFRDRMADWPIRIEALSRFRSGKQQETILQQLSDGKVDIV
IGTHKLLQENVKFKQLGLVIVDEEHRFGVRQKERLKALRAEVDMLTLTATPIPRTLNMSL
SGLRDLSIIATPPAQRLAVKTFVGEWNDQTIREACLREIKRGGQVYFLHNQVETIDKVAR
ELAELVPEAGIAIGHGQMRERELEQVMLDFYHRRFNLLVCTTIIESGIDVPTANTIIINR
ADKLGLAQLHQLRGRVGRSHHRAYAYLVTPPARAMTADAVKRLEAIASLEELGAGFSLST
HDLEIRGAGELLGDEQSGQIQEIGFSLYTELLERAVASLKAGKEPQLERPLEHGAEIDLR
IPALIPDDYVPDVHGRLILYKRIANCRSEDELRELQVELIDRFGLLPPQVKNLFAITRLK
LRALPLGIRKIDAGETAGRFEFTEQPQVDAARIVQLVQTAPANYRLDGVEKLRFTLDMPD
AETRLETVARLLNEISPEAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggaacaccgccccggcgccggcgccggacaagccgttcgacccccgccatccg
cccctgccggaggctggcgcgtgcctgcgctggggccggctgttcggcgacagcctggcg
ctggcgctggccgccgcggcgcgcgactacgccggcccggtggtcctggtcacccccgac
atgccgcagctggagcaactgcagggccaactcggctggttcagcggcggcgacctggaa
cggctcagtttccccgactgggagaccctgccctacgacgccttctcgccgcaccaggac
atcatctcccagcgtatcgagaccctgtaccggctgccggatttccatcagggcgtgctg
atcctgccggtctccaccctgatgcagcgggtcgcaccgctgagctacatccagggccgc
ggcctgtcggtgaaggtcggcgagcggctggacgtggaggccatgcgggcgcgcttcgag
caggccggctatacctgtgtcgcccaggtcatggaacacggcgagttcgcggtgcgcggc
tcgctgctggacatctaccccatgggcagcgaactgccctaccgtctggatctgttcgac
gacgaggtcgagagcatccgcaccttcgatcccgacagccagcgttcgatcgaaaaggtc
gaggccatccatctgctgccggcgcgcgagttccccttcgatcccgatgccgtcagccgt
ttccgccaggcctggcgggcccggttcgagggcgatccgcagcgcagcgccgtctaccgc
gacgtcagccagggcatcagccccaacggcatcgagtactatctgccgctgttcttcgag
cagaccgccagcctgctggactacctgcccgccgactgcctgttcctgcagctgcccggc
tgcgacgccgccgcgcaggacttctggcagcaactcgaggcccggcacgaccagtaccgg
cacgacctcgaacgcccggtgctggcgccggatcaactctacctgggactggatgaactg
gagcggcacctggccgccagccgccgggtggagattctgcgcttcgacgaaggtgccgcg
gaaatcgtcaatttcgccacctgcggcctgcccgatgtctcgctcaagccgcgcgcgacg
cagccggccgaacaactcatgcagttcctcgatcagcacccgggccgggtgctgatcacc
gccgagtccgccggccgccgcgagcatctgctcgacagcctgcgcgacaacggtctgcgc
ccgacgcccgtggaaggctggcaggccttcctggacagtgacgcgcgattggccatcgcc
gtggcgccgctggagcagggcctgcggctggaggacggcacgctggccctgctcaccgag
acccagctgctgggccggcgcgccagccagatcagccggcgcaaaccggcgcgcgacccc
gaggccatcatccgcgatctcaccgatctcgccgtcggcgcgccggtggtgcacgaggag
ctgggcgtgggccgctatctcggcctgcagaagctcaccgccggcggcctggagaacgag
ttcctcaccctggagtacgccggtggcgacaagctgtatgtgccggtcaactcgctgcac
ctgatcagccgctacaccggcagttcgcccgagaccgcgccgctgcacaagctgggcacc
gatcactgggccaaagccaaacgcaaggccgccgagaaggcgcgcgacgtggccgccgaa
ctgctcgacatctatgcccgccgtgccgcccgccagggccacagcttcgacatccacagc
gacgagtaccgccagttcgccgccgccttcccgttcgaggagaccccggaccaggagcag
gccatcgaagcggtgctggccgacatggccgccccgcagccgatggaccgggtggtgtgc
ggcgacgtcggcttcggcaagaccgaggtcgccatgcgcgcggccttcgtcgccgccacc
agcggccagcaggtcgccctgctggtgcccaccaccctgctcgcgcagcagcactacgag
aacttccgcgaccgtatggccgactggcccatccgcatcgaggcgttgtcgcgcttccgc
tccggcaagcagcaggagacgatcctgcagcaactcagtgacggcaaggtcgacatcgtc
atcggcacccacaagctgctgcaggagaatgtgaagttcaagcagctcgggctggtcatc
gtggacgaggagcaccgcttcggcgtgcgccagaaggaacgcctcaaggccctgcgcgcc
gaggtggacatgctcacgctgaccgccacgccgatcccgcgtacgctgaacatgtccctg
tcgggactgcgcgacctgtccatcatcgccaccccgccggcccagcgcctggcggtgaag
accttcgtcggcgagtggaacgaccagaccattcgcgaggcctgcctgcgcgagatcaaa
cgcggcggccaggtctattttctgcacaaccaggtggagaccatcgacaaggtcgcccgc
gaactggccgaactggtgcccgaggccggcatcgccatcggccacggccagatgcgcgag
cgcgaactggaacaggtgatgctggacttctaccaccggcgcttcaacctgctggtatgc
accaccatcatcgagagcggcatcgacgtccccaccgccaacaccatcatcatcaaccgc
gccgacaagctgggcctggcccagctgcaccagctgcgcggccgcgtcggccgctcgcac
caccgcgcctatgcctacctggtcacgccgccggcgcgcgccatgaccgccgacgcggtc
aagcgcctggaggccatcgcctcactggaggaactgggcgcgggcttctcgctctccacc
cacgacctggagatccgcggcgccggcgaactgctgggcgacgagcagagcggccagatc
caggagatcggtttcagcctctacaccgagttgctggaacgcgccgtggcaagcctcaag
gccggcaaggaaccgcagctggaacggccgctggaacatggcgccgagatcgacctgcgc
atccccgccctgatcccggacgactatgtaccggacgtgcacggccgcctgatcctgtac
aagcgcatcgccaactgccgtagcgaggacgaactgcgcgaactgcaggtggagctgatc
gaccgcttcgggctgctgccgccgcaggtgaagaacctgttcgccatcacccggctcaag
ctcagggcgctgccgctgggcatccgcaagatcgacgccggcgagaccgccggccgcttc
gaattcaccgaacagccgcaggtcgatgccgcccgcatcgtgcagctggtgcagaccgca
ccggcgaactaccgtctggacggggtggagaagctgcgcttcaccctggacatgccggac
gccgagacccggctggagaccgtggcccggctgctgaacgagatcagccccgaggccgcc
tga
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