Thermus thermophilus HB27: TT_C0533
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Entry
TT_C0533 CDS
T00170
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tth
Thermus thermophilus HB27
Pathway
tth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TT_C0533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tth03400
]
TT_C0533
Enzymes [BR:
tth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TT_C0533
DNA repair and recombination proteins [BR:
tth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TT_C0533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
UvrB_inter
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAS80881
UniProt:
Q72KB4
Structure
PDB
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All DBs
Position
514876..517812
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AA seq
978 aa
AA seq
DB search
MEIALERIYGHRLALPQVGAALLFAQEAPPALLLVPEARLRRYRDLSAFGAKVYVNPGLE
ALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYPREALLSRLLKLGYARDEDYRVLG
EVVELGEVRLEFFGDELERLVVRGEERRRHVLLPKPGKAEGFTSKKVLHFPGPVYLDTPA
LAPKALWPLLAGRPWVALGGGVELPPLELGARPLPPYRGSLKALEKDLARWLAEGKRVHL
FVGHARTLEYLKRRLQAFSPLILDRFPGPKGRLALLPGDFEGGAEWGEWVLLTEALVFAT
GGVRARVRVGEGLSDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGK
LYLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKEKARKDVEELAGRLLVLQAKRKAT
PGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVA
LRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKG
LAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATP
IPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDR
VASIEARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVP
EANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLG
SGHLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEVKEERRHVTLD
LALSARLPAEYVGSLEARSRYYSRFAEAKSLAELSRLVRELKERYGPLPEEAENFVALAR
LRLVAERKGVVSITEGLTHLEVVFPRYPLDYDARGLKGLPYRVELTQYPPGFRLEKKGLR
PRDYPEALMEVLYLFADL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgcgctagagaggatctacggccaccgcctggcgctcccgcaggtgggggcg
gctctgcttttcgcccaggaggcccccccggccctcctcctcgtccccgaggcgcggctt
aggcgctaccgggacctctccgccttcggggccaaggtctacgtgaaccccggcctcgag
gccctggaggaaaaagccctcttcgtcctctcctacgaggaggccctaagccccttcccc
gaggaccccgaggcctggcggcttcttctggaggtgggccgcgcttacccccgggaggcc
ctcctctcccgcctcctcaagctgggctacgcccgggacgaggactaccgcgtcctgggg
gaggtggtggagctcggcgaggtgcgcctggagttcttcggggacgagctggaaaggctt
gtggtccggggggaggaaaggcggcgccacgtcctcctgcccaagccggggaaggcggag
ggcttcacctccaagaaggtcctccacttccccggccccgtctacctggacacccccgcc
ctcgcccccaaggccctttggcccctccttgcgggaaggccttgggtggccctgggcggc
ggggtggagctcccccccttggagctcggggcgaggcccctccccccttaccggggaagc
cttaaggccctggagaaggacctcgcccgctggcttgccgaggggaagcgggtccacctc
ttcgtgggccacgcccgcaccctggagtacctcaaaaggcgcctccaggccttctcgccc
ctcatcctggaccgcttccccggccccaaggggcggcttgccctcctccccggggacttt
gagggcggggcggagtggggggagtgggttctcctcaccgaggccctggtcttcgccacc
gggggggtgcgggccagggtccgggtaggggaggggctcagcgaccccggggccctttcc
ccaggggactacctcatccacccggagcacggcgtcgggcagtacctgggcctcgagacc
cgggaggtcctgggggtcaagcgggactacctggtcctgcgctacaagggggaagggaag
ctctacctccccgtggagcagcttcccctcctcaagcgccaccccgggaccaccgacgac
cccccggagctttcctccctgggcaaaaacgagtggcagcgggccaaggagaaggccagg
aaggacgtggaggagctggccgggcgcctcctcgtcctccaggccaagcgcaaggccacc
ccgggccgggccttcccccccttgcccgagtgggaccctctggtggagaaggggttcccc
tacgagctcacccccgaccagaagcgggccctggaggaggtcctccgcgacctggaaagc
ccccaccccatggaccgcctggtctcgggggacgtgggcttcggcaagacggaggtggcc
ctgagggccgcccaccgggtggtggggcacggggcccaggtggcctttttggtccccacc
accctcctcgccgagcagcacgggaagacctttagggagcgcttccaggggcttcccgtg
agggtggcggtcctctcccgcttcaccccgcctaaggaggaggaggccatcctaaaaggc
ctcgccgagggcacggtggacatcgtcatcggcacccaccgcctcctccaggaggacgtg
cgcttcagagacctcggcctcctcatcgtggacgaggagcaccgcttcggcgtggcccaa
aaggagaggatccgggagctcaaggcggaggtggataccctttacctctccgccaccccc
atcccccgaaccctctactccgccctggtgggcctcaaagacctttccagcatccagacc
ccgcccccggggcgcaagcccatcaagaccttcctcgcgccctttgaccccctcttggtg
cgggaggccatcctctttgagctggagcgcgggggcaaggtcttctacgtccacgaccgg
gtggcctccatagaggccaggcggcgctttctggaaagcctcgtccccgaggcccgcatc
ggggtggttcacggccagatgcccgaaagcctcattgaggagaccatgctcctcttcgcc
gaaggggcgtacgacgtcctcctcgccaccaccatcattgaggcgggcctggacgtgccc
gaggcgaacaccatcctcattgagcgggcggaccgcctgggcctcgccaccttgtaccag
ctccggggccgggtggggcggagggaggaggaggcctacgcctacctcttccacccgccc
cgcctcaccgaggccgcggagaagcgcctcgccgccatcgccgacctctccgatctgggc
tcgggccacctcctggccgaaagggacatggagatccggggcgtggggaaccttttgggg
ccggagcagcacgggcacatccgggcgctttccctcgaggtctacaccgagcttctggaa
gaggccatccgcaagctcaagggggaggtcaaggaggagcggcggcacgtgaccctggac
ctcgccctctccgcccgcctgcccgcggagtacgtggggagcctcgaggcgaggagccgc
tactacagccgctttgccgaggcgaaaagcctcgccgagctttcccgcctggtgcgggag
ctcaaagagcgctacgggccccttcctgaggaggcggagaacttcgtggccctcgcccgg
ctccgcctggtggcggagaggaagggggtggtgtccatcacggagggcctcacccacctg
gaggtggtcttcccccgctaccccttggactacgacgcccgcggcctcaaagggcttccc
taccgggtggagcttacgcagtacccgcccgggttccgcctggagaagaagggcctgagg
ccccgggactaccccgaggccctgatggaggtgctctacctcttcgccgacctctaa
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