Thermus thermophilus HB8: TTHA0889
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Entry
TTHA0889 CDS
T00220
Symbol
TTHA0889
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttj
Thermus thermophilus HB8
Pathway
ttj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TTHA0889 (TTHA0889)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttj03400
]
TTHA0889 (TTHA0889)
Enzymes [BR:
ttj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TTHA0889 (TTHA0889)
DNA repair and recombination proteins [BR:
ttj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TTHA0889 (TTHA0889)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
UvrB_inter
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAD70712
UniProt:
Q5SJW3
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All DBs
Position
1:845828..848764
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AA seq
978 aa
AA seq
DB search
MEIALERIYGHRLALPQVGAALLFAQEAPPALLLVPEARLRRYRDLSAFGAKVYVNPGLE
ALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYPREALLSRLLKLGYARDEDYRVLG
EVVELGEVRLEFFGDELERLVVRGEERRRHVLLPKPGKAEGFTSKKVLHFPGPVYLDTPA
LAPKALWPLLAGRPWVALGGGVELPPLELGARPLPPYRGSLKALEKDLARWLAEGKRVHL
FVGHARTLEYLKRRLQAFSPLILDRFPGPKGRLALLPGDFEGGAEWGEWVLLTEALVFAT
GGVRARVRVGEGLSDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGK
LYLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKERARKDVEELAGRLLVLQAKRKAT
PGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVA
LRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKG
LAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATP
IPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDR
VASIEARRRFLENLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVP
EANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLG
SGHLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEAKEERRHVTLD
LALSARLPAEYVGSLEARSRYYSRFAEAKSLAELSRLVRELKERYGPLPEEAENFVALAR
LRLVAERKGVVSITEGLTHLEVVFPRYPLDYDARGLKGLPYRVELTQYPPGFRLEKKGLR
PRDYPEALMEVLYLFADL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgcgctagagaggatctacggccaccgcctggcgctcccgcaggtgggggcg
gccttgcttttcgcccaggaggcccccccggccctcctcctcgtccccgaggcgcggctt
aggcgctaccgggacctctccgccttcggggccaaggtctacgtgaaccccggcctcgag
gccctggaggaaaaagccctcttcgtcctctcctacgaggaggccctaagccccttcccc
gaggaccctgaggcctggcggcttcttctggaggtgggccgcgcctacccccgggaggcc
ctcctctcccgcctcctcaagctgggctacgcccgggacgaggactaccgcgtcctgggg
gaggtggtggagctcggcgaggtgcgcctggagttcttcggggacgagctggaaaggctt
gtggtccggggggaggaaaggcggcgccacgtccttctgcccaagccggggaaggcggag
ggcttcacctccaagaaggtcctccacttccctggccccgtctacctggacacccccgcc
ctcgcccccaaggccctttggcccctcctcgcgggaaggccctgggtggccctgggcggc
ggggtggagctcccccccttggagctcggggcgaggccccttcctccttaccggggaagc
ctgaaggccctggaaaaggacctcgcccgctggcttgccgaggggaagcgggtccacctc
ttcgtgggccacgcccgcaccttggagtacctcaaaaggcgcctccaggccttctcgccc
ctcatcctggaccgcttccccggccccaaggggcggcttgccctcctccccggggacttt
gagggcggggcggagtggggagagtgggtcctcctcaccgaggccctggtcttcgccacc
gggggggtgcgggccagggtccgggtaggggaggggctcagcgaccccggggccctttcc
ccaggggactacctcatccacccggagcacggcgtcgggcagtacctgggcctcgagacc
cgggaggtcctgggggtcaagcgggactacctggtcctgcgctacaagggggaagggaag
ctctacctccccgtggagcagcttcccctcctcaagcgccaccccgggaccaccgacgac
cccccggagctttcctccctgggcaagaacgagtggcaaagggccaaggagcgggcgcgg
aaggacgtggaggagctggctgggcgcctcctcgtcctccaggccaagcgcaaggccacc
ccgggccgggcctttccccctttgcccgagtgggatcctctggtggagaaggggttcccc
tacgagctcacccccgaccagaagcgggccctggaggaggtcctccgcgacctggaaagc
ccccaccccatggaccgcctggtctcgggggacgtgggcttcggcaagacggaggtggcc
ctgagggccgcccaccgggtggtggggcacggggcccaggtggccttcctcgtgcccacc
accctcctcgccgagcagcacgggaagacctttagggagcgcttccaggggcttcccgtg
agggttgcggtcctctcccgcttcaccccgcccaaggaggaggaggccatcctaaaaggc
ctcgccgaggggacggtggacatcgtcatcggcacccaccgcctcctccaggaggacgtg
cgcttcagggacctcggcctcctcatcgtggacgaggagcaccgcttcggcgtggcccaa
aaggagaggatccgggagctcaaggcggaggtggacaccctctacctctccgccaccccc
atcccccgcaccctctactccgccctggtgggcctcaaagacctttccagcatccagacc
ccgcccccggggcgcaagcccatcaagaccttcctcgctccctttgatcccctcttggtg
cgggaggccatcctctttgagctggagcgtgggggcaaggtcttctacgtccacgaccgg
gtggcctccatagaggccaggcggcgctttctggaaaacctcgtccccgaggcccgcatc
ggggtggtccacggccagatgcccgaaagcctcattgaggagaccatgctcctcttcgcc
gaaggggcgtacgacgtcctcctcgccaccaccatcattgaggcgggcctggacgtgccc
gaggcgaacaccatcctcattgagcgggcggaccgcctgggcctcgccaccttgtaccag
ctccggggccgggtggggcggagggaggaggaggcctacgcctacctcttccacccgcct
cgcctcaccgaggccgcggagaagcgcctcgccgccatcgccgacctctccgatctgggc
tcgggccacctcctggccgaaagggacatggaaatccggggcgtggggaaccttttgggg
ccggagcagcacgggcacatccgggcgctttccctcgaggtctacaccgagcttctggaa
gaggccatccgcaagctcaagggggaggccaaggaggagcggcggcacgtgaccctggac
ctcgccctctccgcccggctgcccgcggagtacgtggggagcctcgaggccaggagccgc
tactacagccgttttgccgaggcgaaaagcctcgccgagctttcccgcctggtgcgggag
ctcaaagagcgctacgggccccttcctgaggaggcggagaacttcgtggccctcgcccgg
ctccgcctggtggcggagaggaagggggtggtgtccatcacggagggcctcacccacctg
gaggtggtcttcccccgctaccccctggactacgacgcccgcggcctcaaggggcttccc
taccgggtggagcttacgcagtacccgcccgggttccgcctggagaagaagggcctgagg
ccccgggactaccccgaggccctgatggaggtgctctacctcttcgccgacctctag
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