Thermoanaerobacterium thermosaccharolyticum DSM 571: Tthe_0201
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Entry
Tthe_0201 CDS
T01299
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttm
Thermoanaerobacterium thermosaccharolyticum DSM 571
Pathway
ttm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tthe_0201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttm03400
]
Tthe_0201
Enzymes [BR:
ttm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tthe_0201
DNA repair and recombination proteins [BR:
ttm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tthe_0201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
IstB_IS21
ATPase_2
RecG_dom3_C
Cas_Csd1
VanY
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADL67776
UniProt:
D9TPJ4
LinkDB
All DBs
Position
195900..199400
Genome browser
AA seq
1166 aa
AA seq
DB search
MFIKPIENLKEIAEIDEAIEKERMPLLIYGLTDSQKAHIAHYIIKKLNKKVLFITYADVE
ARAIYEDLISFLNGDAYLIPSRDALFYKVDASSLDLIGKRLIAVKKIIDDKPSAFVASID
GVLNKVASKDIFLRYSRKYKIGDIIDLEELSSSLITMGYERVPMVEGKGQFSIRGGIIDF
FSPMEDEGFRIELFDDVIDSIRSFDVFTQRSLNNLSEVELFPAREFILEDENIKKGMENL
SSNVNSYVSKIKETHSGRAEKIKKKFDEIMENISETKSVPNIGELISFFYERLYSIVDYF
DDAFIILDENIRVKERASNILTEFNENFKSLLLSGEVLPEQSNLLFSYDDILKKLSGKSL
ILMNTIVKSDANIEVRSIVNFVSRSMHPFHGKLELLVDDIKFYRKSGYKVVMLSSNLERG
RILRDSLISYGLEVPIVDDEEYDIPEGGILIYPGTVSKGFEYVDAKFALISDVEIFGQSR
KPRKSFKVKNENRIRNFTELTVGSYVVHVNYGIGKYEGIEKITFDGVTKDYLKIKYAGDD
KLFIPVDQLDLIQKYIGPEDKPPKLNKLGGNEWSKLKKKAKKAVEDLAKDLIKLYAKRQT
MKGYAFSKDTPWQKDFEERFPYEETEDQLRCIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSYKEQSQIIK
SLAEGTIDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSAT
PIPRTLHMSLIGIRDMSVIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYN
RINGIERMASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDI
PNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFT
EFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKPNT
TIDIKVSAYIDKEYIEDENQRLEMYKKISSIENEKDVEDIKDELIDRFKEYPKAVESLID
VAYLKALARDVNILEITERGNSIILKFKDNKSINSSIVDALVNEFKGKIMFSGQIPPYIT
YKYGKREDLLKELINLVSKIKCLQIN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgtttataaagcccatagaaaatttaaaagagattgcggaaattgatgaggctattgag
aaagagaggatgcccttattaatatatggactaacagattctcaaaaagctcatattgcc
cattatatcataaagaagctgaataagaaggtgctgtttataacgtacgctgatgtagaa
gcaagggctatctatgaagacttaatttcttttttaaatggtgatgcttacctgatacca
tccagagatgcccttttctataaagttgatgcgtcaagccttgaccttatagggaaaagg
cttattgctgtgaaaaaaattattgacgataaaccatctgcatttgtcgcttcaatagac
ggggtattgaataaagttgcctctaaagatatttttttaagatatagtcgtaaatataaa
attggggatattatcgatttagaggaattatcttcatctttgataacgatgggatacgaa
agagtacctatggtggaagggaaaggacagttcagcatacgaggtggcataatagatttt
ttctctccgatggaagatgaaggtttcaggatagagctttttgatgatgtaattgactct
attaggagttttgatgtttttactcagagatctttaaataatctaagtgaagtagagcta
tttcctgccagagagtttatactggaggacgaaaacatcaaaaagggcatggaaaatctc
agcagcaatgtgaattcgtatgtttcaaagataaaagaaactcacagtggaagagcggaa
aagattaagaagaaatttgatgaaatcatggaaaatatcagcgagaccaaaagtgtgcca
aatataggagaattaataagctttttctatgaaagactttattccattgtggattatttt
gacgatgcatttattatcttagatgaaaatataagagtaaaagagagagcatcaaatatt
ttgactgagtttaacgagaatttcaaatcgttgcttttatctggcgaggttttgccggag
cagtcgaatcttttatttagttatgatgatatattaaagaagctttcaggcaaatcgctg
attttgatgaatactatagtaaaatctgatgcgaatattgaagtgagaagtattgttaat
tttgtgtcaagatcgatgcatccttttcatggtaagcttgaactgctggtagacgatata
aaattctacagaaagtccgggtataaagttgtaatgctttcaagcaatttagaaagagga
aggatattgagagattccctgataagttatggattagaggtacctatagttgatgatgag
gaatacgatattcccgaaggaggcattttgatatacccagggactgtcagcaaaggattt
gaatacgtagatgcaaaatttgcgttaataagcgatgttgagattttcggacagtccaga
aagccaagaaaatcgtttaaagtgaaaaatgaaaacaggataaggaattttacagaactt
acagttggatcatacgtagtacatgtcaattacggtataggaaagtatgaaggaatagaa
aaaataacttttgatggtgttacaaaggattatcttaagataaaatatgcgggagatgac
aagctatttatacctgtcgatcaactggatttgatacaaaagtatataggtcccgaggac
aaaccgccaaagcttaataagctgggtggaaatgaatggtctaagcttaagaaaaaggcc
aaaaaagctgtggaggatctggcaaaggatctgataaaactttacgcaaaaaggcagacg
atgaagggatatgctttttcaaaggatacaccatggcagaaggattttgaagagagattt
ccatacgaagagacggaagaccaactacggtgtatagaagagataaaaagagatatggaa
agtgacaaaccaatggacagattgctttgcggtgatgtaggatatgggaaaactgaagtt
gcattaagggctgcttttaaagctgtagctgatggaaagcaggtggcttttttatgcccg
acaactatattggctgaacagcactacaataattttgtacaaagatttaaggattttccg
gtaaagatagaaatgttgtcacggtttagaagctataaggagcaatcacaaattataaag
tcattggcggagggaactattgatatacttgttgggactcataagattttgcaaaatgat
gtaaagtttaaagacttaggccttttaattatcgatgaagaacagagatttggtgtcaaa
cataaagagaaaattaagaagttaaaggagaatattgatgtgttgtctctgtcagcgaca
ccaattcctaggacattgcatatgtccctaatcggtataagagatatgagcgtaatagaa
aatcctccagaagacaggtatcctgtccagacgtacgttgttgaatttaatgaagaactt
ataagggatgctattttgagagaactgggtcgcggaggacaagtttatttcgtctataac
agaataaatggcattgaaagaatggcttcaattataaaagaactggttcctagtgcacgg
gtagctgtagcacatggtcagatggatgaaggaaagctggagaatataatgattggattt
ttaaatggtgattatgacatattggtatgtacaacaataattgagacaggccttgacata
ccaaatgtcaatacaattatagtctacgattccgacaagatgggcctatcgcaactgtat
cagttgagaggaagagtgggcagatccaatagattggcgtatgcttattttacttataga
aaagataaggttattactgaagttgcagaaaaaagattggaagctataaaagagtttaca
gagtttggttcgggatttaaaattgctatgagagatcttgaaataagaggtgcaggaaat
cttctgggtgctgaacaacatggccatatagatgcaatagggtatgacatgtatctaagg
cttctggatgaagccataaaaggcttaaaaggtgaagttgaagatgaaaagccaaatacc
acaattgacattaaagtaagcgcgtatatagacaaagaatacattgaagatgaaaatcaa
aggcttgaaatgtacaaaaagatttcttcaatcgaaaatgaaaaggacgtagaagatata
aaagacgaacttatcgacagatttaaagagtatccaaaagcagttgaatctcttatcgat
gtggcatatttaaaagcactggcaagggatgtaaatatattggaaattactgaaagaggt
aattctataatcttgaagtttaaggacaacaagtccataaattcaagcatagttgatgct
ttagtcaatgaatttaaaggtaaaataatgttttcgggccaaattccaccatacattacc
tataagtatggcaaaagggaagatttattgaaggaattgatcaatttggtcagcaagatt
aaatgtttgcagataaattaa
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