Thermoproteus tenax: TTX_1883
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Entry
TTX_1883 CDS
T01641
Symbol
lig1
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ttn
Thermoproteus tenax
Pathway
ttn03030
DNA replication
ttn03410
Base excision repair
ttn03420
Nucleotide excision repair
ttn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TTX_1883 (lig1)
03410 Base excision repair
TTX_1883 (lig1)
03420 Nucleotide excision repair
TTX_1883 (lig1)
03430 Mismatch repair
TTX_1883 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttn03032
]
TTX_1883 (lig1)
03400 DNA repair and recombination proteins [BR:
ttn03400
]
TTX_1883 (lig1)
Enzymes [BR:
ttn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TTX_1883 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
TTX_1883 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TTX_1883 (lig1)
DNA replication proteins [BR:
ttn03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TTX_1883 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TTX_1883 (lig1)
DNA repair and recombination proteins [BR:
ttn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TTX_1883 (lig1)
NER (nucleotide excision repair)
Other NER factors
TTX_1883 (lig1)
MMR (mismatch excision repair)
Other MMR factors
TTX_1883 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
LZ3wCH
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CCC82500
UniProt:
G4RLQ5
LinkDB
All DBs
Position
complement(1632272..1634050)
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AA seq
592 aa
AA seq
DB search
MEFSELAKVLAGIESTTQRTMMVKLLVNLFKKLGPDEIDKAIYIILGDVRPPWEGVELGI
AEKLCLRALSRASGVKLEELESLYQKTGDVGEAARKALSKRQAQTLLAFAGAKRAPLSIS
QVYDTFLKIARTTGEGSIDLKVSLLSSLFSQASPEEAKYIARFVVGKLRLGVADMTIIDA
LAEAFNVDEGQLEKAYNIHPDLGYLAKVVLERGQAGLAQVRVTPGVPVMPMLAQRLSTSH
EVLTKLGGAAICEYKYDGERAQIHIGPNGISIYSRRLENITHAYPDVVEAVRRSVSAKEA
IIEGEIVALDPDTGDILPFQELMHRKRKHEVEEAMREYPVKLNLFDVIYLDGEDLTDKPL
IYRRLKLSEIVRESEDVVIAKWALFDDEEKVDLFFHEAISMGMEGLVCKSPTSLYEMGAR
GWNWIKYKRDYRSEMSDTVDLVVVGAFYGRGKRAGLYGAFLMAAYDPKTDMFYTVCKVGS
GFTDADLKKMYQMLEPYKIDHRHPRVSSRMEPDVWFTPGIVLEIIGAEITLSPLHTCCQG
AIKPDVGLAIRFPRFTGRYRSDKGPEEATTVDELLEIYRNQKKVKLEGPATT
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagttctcggagttggccaaagttctggcgggcatagagtccacaactcagaggact
atgatggtgaagctgcttgtgaacctctttaagaagttgggccccgacgaaatagacaag
gccatatacattatactgggggacgtgaggccgccctgggagggcgtagagttgggcatc
gccgagaagctgtgtctgagggcgctctctagggcgtccggcgtcaagctcgaggagcta
gagtcgctgtatcagaagacgggggacgtcggcgaggccgccagaaaggcgctctccaaa
aggcaggcgcagacgctgttggcgttcgcaggcgccaagagggcccccctctctatctca
caagtctacgacacgtttttgaagatagcgaggaccaccggagaggggtcgatagatcta
aaggtctccctcctctcgtcgctcttctctcaagcctcgccggaggaggccaagtatata
gccagattcgtggtgggcaaactgcgcttgggcgtcgcagatatgaccataatcgatgcc
ctagccgaggccttcaacgtagacgaggggcaactggagaaggcctacaatatacatccg
gacctcggctatctggccaaggtagtcctcgagagaggacaggccggcctcgcgcaagtg
agagtcacgcccggcgtgcccgtgatgcccatgttagcccagaggctgagcacgtcgcac
gaggtcttgaccaagctggggggcgctgcaatatgcgaatataaatacgatggagagagg
gcgcagatacacattggcccaaacggcatctccatctacagccgccgcctggagaatata
acacacgcgtaccccgacgttgtggaggctgtgaggcgctctgtctcggccaaggaggcg
ataatcgagggcgagatcgtcgcgctggaccccgacactggggatatcctgcccttccaa
gagctcatgcacagaaagaggaagcacgaggtggaggaggcaatgagggagtacccggtg
aagcttaacctgttcgacgttatctacctagacggagaggatctgaccgacaaacccctc
atctaccgacgcctcaagctctccgagatagtcagagagagcgaggacgtagtaatagcc
aaatgggctttgttcgacgatgaagagaaagtggatctgtttttccacgaggcaatctcg
atgggcatggagggcctcgtctgtaaatctccgacctcactctacgagatgggggcccgg
ggctggaactggataaaatacaagcgcgattaccgaagcgagatgagcgacacagtagat
ctagtggtagtgggcgccttctacggcagagggaagagggccggtctctacggagccttc
ctcatggcggcctacgatcccaagaccgacatgttctacactgtgtgtaaagtgggcagc
gggttcactgacgcagatctgaaaaagatgtaccagatgttggagccctacaaaatagac
cacagacatcctcgggtttcgtcgcgtatggagcccgacgtctggttcacgcctggcatc
gtccttgaaataataggggccgagatcacgctctcgccgttgcacacgtgctgtcaaggg
gccataaagccggacgtagggcttgccatcagatttcccagatttactggccgctatagg
tcggacaaggggcctgaggaggccaccacagtggacgagcttctggagatatacaggaac
cagaaaaaggttaaactggaggggcctgctacgacttaa
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