Thermoanaerobacterium thermosaccharolyticum M0795: Thethe_00183
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Entry
Thethe_00183 CDS
T02407
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tto
Thermoanaerobacterium thermosaccharolyticum M0795
Pathway
tto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thethe_00183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tto03400
]
Thethe_00183
Enzymes [BR:
tto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thethe_00183
DNA repair and recombination proteins [BR:
tto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thethe_00183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ATPase_2
AAA_22
IstB_IS21
RecG_dom3_C
Cas_Csd1
Peroxin-22
VanY
ApoLp-III
Motif
Other DBs
NCBI-ProteinID:
AGB17917
UniProt:
L0IIW7
LinkDB
All DBs
Position
171717..175217
Genome browser
AA seq
1166 aa
AA seq
DB search
MFIKPIENLKEIAEIDEAIEKERMPLLIYGLTDSQKAHIAHYIIKKLNKKVLFITYDDVE
ARAIYEDLISFLNGDAYLIPSRDALFYKVDASSLDLIGKRLIAVKKIIDDKPSAFVASID
GVLNKVASKDIFLRYSRKYKVGDIIDLEELSSSLVTMGYERVPMVEGKGQFSIRGGIIDF
FSPMEDEGFRIELFDDVIDSIRSFDVFTQRSLNNLSEVELFPAREFILEDENIKKGMENL
SRNVNSYISKIKETYSGRAEKIKKKFDEIMENISETKSVPNIGELISFFYDRLYSIVDYF
DDAFVILDENVRVKERASNILTEFNENFKSLLLSGEVLPEQSNLLFSYDDILKKLSGKSL
ILMNTIVKSDANIEVRSIVNFVSRSMHPFHGKLELLVDDLKFYRKSGYKVVMLSSNLERG
RMLRDSLISYGLEVPIVDDEEYNIPDGGILIYPGTVSKGFEYVDAKFALISDVEIFGQSR
KPRKSFKAKNENRIRNFTELTVGSYVVHVNYGIGKYEGIEEITFDGVTKDYLKIKYAGDD
KLFIPVDQLDLIQKYIGPEDKPPKLNKLGGNEWSKLKKKAKKAVEDLAKDLIKLYAKRQT
MKGYAFSKDTPWQKDFEERFPYEETEDQLRCIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSYKEQSQIIK
SLAEGTIDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSAT
PIPRTLHMSLIGIRDMSVIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYN
RINGIERMASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDI
PNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFT
EFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKPNT
TIDIKVSAYIDKEYIEDENQRLEMYKKISSIENEKDVEDIKDELIDRFKEYPKAVESLID
VAYLKALARDVNITEIAEKGASIILKFKDSKSINSGIVDSLVNEFRGRIMFSGQVPPYIT
YKYNKKEDVLKELINLVNKIKCLQIN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgtttataaagcccatagaaaatttaaaagagattgcggaaattgatgaggctattgag
aaagagaggatgcccttattaatatatggactaacagattctcaaaaagctcatattgcc
cattatatcataaagaagctgaataagaaggtgctgtttataacgtacgatgatgtagaa
gcaagggctatctatgaagacttaatttcttttttaaatggtgatgcttacctgatacca
tccagagatgcccttttctataaagttgatgcgtcaagccttgaccttatcgggaaaagg
cttattgctgtgaaaaaaattattgacgataaaccatctgcatttgtcgcttcaatagac
ggggtattgaataaagttgcctctaaagatatttttttaagatatagtcgtaaatataaa
gttggagatattatcgatttagaggaattatcttcatctttggtaacgatgggctacgaa
agagtacctatggtggaagggaaaggacagttcagcatacgaggtggcataatagatttt
ttctcaccgatggaagatgaaggttttaggatagaactttttgatgatgtaattgattct
attaggagttttgacgtttttactcagagatctttaaataatctaagcgaagtagagcta
tttcctgctagagagtttatactggaagacgaaaacatcaaaaagggcatggaaaatctc
agcagaaatgtaaattcgtatatttcaaagataaaagaaacttacagcggaagagcggaa
aagattaagaagaaatttgatgaaatcatggaaaatatcagtgagaccaaaagtgtgcca
aatataggagaattaataagctttttctatgatagactttactccattgttgattatttt
gacgatgcatttgtcatattagatgaaaatgtaagagtgaaagaaagagcatcaaatatt
ttgactgagtttaacgagaatttcaaatcgttgcttttatctggcgaggttttgccggag
cagtcgaatcttttatttagttatgatgatatattaaagaagctttcaggcaaatcgctg
attttgatgaatactatagtaaaatctgatgcgaatattgaagtgagaagtattgttaat
tttgtgtcaagatcgatgcatccttttcatggtaagcttgaactgctggtagacgattta
aaattctatagaaagtcagggtacaaagttgtaatgctttcaagcaatttagaaagagga
aggatgttgagagattcactgataagttatggattagaggtacctatagttgatgatgaa
gaatacaatattcccgatggaggcattttgatatacccagggactgtcagcaagggattt
gaatacgtagatgcaaaatttgcattaataagcgacgttgagattttcggtcagtctaga
aagccaagaaaatcgtttaaagcgaaaaatgaaaacaggataaggaattttacagaactt
acagttggatcatacgtagtacatgtcaattacggtataggaaagtatgaaggaatagaa
gaaataacttttgatggtgttacgaaggattatcttaagataaaatatgcgggagatgac
aagctatttataccagtggatcaactggatttgatacaaaagtatataggtcctgaggac
aaaccgccaaagcttaataagttaggcggaaatgaatggtccaagcttaagaaaaaagcc
aaaaaggccgtggaagatctggctaaggatctgattaaactttacgccaaaaggcaaaca
atgaagggatatgctttttcaaaagatacaccatggcagaaggattttgaagagaggttt
ccatacgaagagacggaagaccaactaaggtgtatagaagaaataaaaagagatatggaa
agtgacaaaccaatggacagattgctttgcggtgatgtaggatatgggaaaactgaagtt
gcattaagggctgcttttaaagctgtagctgatggaaagcaggtggcttttttatgcccg
acaactatattggctgaacagcactacaataattttgtacaaagatttaaagattttccg
gtaaagatagaaatgttgtcacggtttagaagctataaggagcaatcacaaattataaag
tcattggcggagggaactattgatatacttgttgggactcataagattttgcaaaatgat
gtaaagtttaaagacttaggccttttaattatcgatgaagaacagagatttggcgtcaaa
cataaagagaaaattaagaagttaaaggagaatattgatgtgttgtctctgtcagcgaca
ccaattcctaggacattgcatatgtccctaatcggtataagagatatgagcgtaatagaa
aatcctccagaagacaggtatcctgtccagacgtacgttgttgaatttaatgaagaactt
ataagggatgctattttgagagaactgggtcgcggaggacaagtttatttcgtctataac
agaataaatggcattgaaagaatggcttcaattataaaagaactggttcctagtgcacgg
gtagctgtagcacatggtcagatggatgaaggaaagctggagaatataatgattggattt
ttaaatggtgattatgacatattggtatgtacaacaataattgagacaggccttgacata
ccaaatgtcaatacaattatagtctacgattccgacaagatgggcctatcgcaactgtat
cagttgagaggaagagtgggcagatccaatagattggcgtatgcttattttacttataga
aaagataaggttattactgaagttgcagaaaaaagattggaagctataaaagagtttaca
gagtttggttcgggatttaaaattgctatgagagatcttgaaataagaggtgcaggaaat
cttctgggtgctgaacaacatggccatatagatgcaatagggtatgacatgtatctaagg
cttctggatgaagccataaaaggcttaaaaggtgaagttgaagatgaaaagccaaatacc
acaattgacattaaagtaagcgcgtatatagacaaagaatacattgaagatgaaaatcaa
aggcttgaaatgtacaaaaagatttcttcaatcgaaaatgaaaaggacgtagaagatata
aaagacgaacttatcgacagatttaaagagtatccaaaagcagttgaatctcttatcgat
gtggcatatttaaaagcactggcaagggatgtaaatataacagagattgcagaaaagggt
gcatcaataatattgaagtttaaagattctaaatctataaattctggaattgtagattcg
ttagtgaatgagtttagaggaaggattatgttttcagggcaggttccaccatatataacc
tacaagtacaataaaaaggaagacgtgttgaaggaattgattaatcttgttaacaaaatt
aaatgtttgcagattaactaa
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integrated database retrieval system
