Thermus thermophilus SG0.5JP17-16: Ththe16_0890
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Entry
Ththe16_0890 CDS
T01867
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tts
Thermus thermophilus SG0.5JP17-16
Pathway
tts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ththe16_0890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tts03400
]
Ththe16_0890
Enzymes [BR:
tts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ththe16_0890
DNA repair and recombination proteins [BR:
tts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ththe16_0890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
UvrB_inter
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEG33307
UniProt:
F6DGE9
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All DBs
Position
845039..847975
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AA seq
978 aa
AA seq
DB search
MEIALERIYGHRLALPQVGAALLFSQEVPPALLLAPEARLRRYRDLSAFGARVYVNPGLE
ALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYPREALLSRLLKLGYARDEDYRVLG
EVVELGEVRLEFFGDELERLLVRGKERRRHVLLPKPGKAEGFTSKKVLHFPGPVYLDTPA
LAPKALWPLLAGRPVVALGGGVELPPLDLGAKPLPPYRGSLKALEKDLARWLAEGKRVHL
FVGHARTLEYLKRRLQAFSPLVLDRFPGPKGRLALLPGDFEGGAEWGEWVLLTEALVFAT
GGVRARVRVGEGLSDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLILRYKGEGK
LYLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKERARKDVEELAGRLLVLQAKRKAT
PGRAFPPLPDWDPLVERGFPFELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVA
LRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKG
LAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATP
IPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDR
VASIEARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVP
EANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLG
SGHLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEIKEERRHVTLD
LALSARLPAEYVGSLEARSRYYSRFAEAKSLAELSRLVRELKERYGPLPEEAENFVALAR
LRLVAERKGVVSITEGLTHLEVVFPRYPLDYDARGLKGLPYRVELTQYPPGFRLEKKGLR
PRDYPEALMEVLYLFADL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgcgctagagaggatctacggccaccgcctggcccttccgcaggtgggggcg
gccctgcttttctcccaggaggtccccccggcccttctcctcgctcccgaggcgcggctt
cggcgctaccgggacctttccgccttcggggcgcgggtctacgtgaaccccggcctcgag
gccctggaggaaaaagccctcttcgtcctctcctacgaggaggccctaagccccttcccc
gaggaccccgaggcctggcggcttcttctggaggtgggccgcgcttacccccgggaggcc
ctcctctcccgcctcctcaagctgggctacgcccgggacgaggactaccgcgtcctgggg
gaggtggtggagctcggcgaggtgcgcctggagttcttcggggacgagctggaaaggctt
ttggtccgggggaaggagaggcggcgccatgtccttttgcccaagccggggaaggcggag
ggcttcacctccaagaaggtcctccacttccccggccctgtctacctggacacccccgcc
ctcgcccccaaggccctttggcccctccttgcgggaaggcccgtggtggccttggggggt
ggcgtggagcttccccccctggaccttggcgctaagccccttcccccttaccggggaagc
cttaaggccctggaaaaagacctcgcccgctggctcgccgaggggaagcgggtccacctc
ttcgtgggccacgcccgcaccctggagtacctcaaaaggcgcctccaggccttctcgccc
ctcgtcctggaccgcttccctggccccaaggggcggcttgccctcctccccggggacttt
gagggcggggcggagtggggggagtgggtcctcctcaccgaggccttggtcttcgccacc
gggggggtgcgggccagggtccgggtaggggaggggcttagcgaccccggggccctttcc
ccaggggactacctcatccacccggagcacggcgtcgggcagtacctgggcctggagacc
cgggaggtcctgggggtcaagcgggactacctgatcctgcgctacaagggggaagggaag
ctctacctccccgtggagcagcttcccctcctcaagcgccaccccgggaccaccgacgac
cccccggagctttcctccctgggcaagaacgagtggcaaagggccaaggagcgggcgcgg
aaggacgtggaggagctggctgggcgcctcctcgtcctccaggccaagcggaaggccacc
ccgggccgggccttcccgccccttcctgactgggaccccttggtggagaggggcttcccc
tttgagctcacccccgaccagaagcgggccctggaggaggtcctccgcgacctggaaagc
ccccaccccatggaccgcctggtctcgggggacgtgggctttggcaagacggaggtagcc
ttgagggccgcccaccgggtggtggggcacggggcccaggtggcctttttggtccccacc
accctcctcgccgagcagcacgggaagacctttagggagcgcttccaggggcttcccgtg
agggttgcggtcctctcccgcttcaccccgcccaaggaggaggaggccatcctgaagggt
ctcgccgagggcacggtggacatcgtcatcggcacccaccgcctcctccaggaggacgtg
cgcttcagagacctcggcctcctcatcgtggacgaggagcaccgcttcggcgtggcccaa
aaggagaggatccgggagcttaaagcggaggtggacaccctctacctctccgccaccccc
atcccccgcaccctctactccgccctggtgggcctcaaagacctttccagcatccagacc
ccgcccccggggcgcaagcccatcaagaccttccttgcgccttttgaccccctcttggtg
cgggaggccatcctctttgagctggagcgtgggggcaaggtcttctacgtccacgaccgg
gtggcctccatagaggccaggcggcgctttctggaaagcctcgtccccgaggcccgcatc
ggggtggtccacggccagatgcccgaaagcctcattgaggagaccatgctcctcttcgcc
gaaggggcgtacgacgtcctcctcgccaccaccatcattgaggcgggcctggacgtgccc
gaggcgaacaccatcctcattgagcgggcggaccgcctgggcctcgccaccttgtaccag
ctccggggccgggtggggcggagggaggaggaggcctacgcctacctcttccacccgcct
cgcctcaccgaggccgcggagaagcgcctcgccgccatcgccgacctctccgatctgggc
tcgggccacctcctggccgaaagggacatggagatccggggcgtggggaaccttttgggg
ccggagcagcacgggcacatccgggcgctttccctcgaggtctacaccgagcttctggaa
gaggccatccgcaagctcaagggggagatcaaggaggagcggcggcacgtgaccctggac
ctcgccctctccgcccggctgcccgcggagtacgtggggagcctcgaggcccgaagccgc
tactacagccgttttgccgaggcgaaaagcctcgccgagctttcccgcctggtgcgggag
ctcaaggagcgctacgggcctctccctgaggaggcggagaacttcgtggccctcgcccgg
ctccgtctggtggcggagaggaagggggtggtgtccatcacggagggcctcacccacctg
gaggtggtcttcccccgctaccccttggactacgacgcccgcggcctcaaagggcttccc
taccgggtggagcttacgcagtacccgcccgggttccgcctggagaagaagggcctaagg
ccccgggactaccccgaggccctgatggaggtgctctacctcttcgccgacctctaa
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