Tepidimonas taiwanensis: LCC91_04420
Help
Entry
LCC91_04420 CDS
T07546
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCC91_04420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttw03400
]
LCC91_04420 (mfd)
Enzymes [BR:
ttw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCC91_04420 (mfd)
DNA repair and recombination proteins [BR:
ttw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCC91_04420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
UBQ06342
LinkDB
All DBs
Position
complement(956608..960096)
Genome browser
AA seq
1162 aa
AA seq
DB search
MDLPRLTPGKRFASPRPAPSGDALLLAALAAREKAAGRPMAIVTADAADAQRLLAELPFF
EPGLRCALFPDWETLPYDSFSPHQDLISERLATLWRIQQRKADDGADVILIPATTALYRL
APPSFLAAYTFHFKVGQKLDEAKLRAQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGAP
MPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEAARTRFRARWRELLEG
DPTKSRLYKDIGNGVATAGIEYYLPLFFDETATVFDYLGDDAALVLHGDLDDAFQRFWQD
TRERYRLVRGDPDRPALPPETLFLTPEAFYTRAKPYPQWALRPAPATEALNTWASVIGAL
PDLAAQRGADDPLRKLHDHLQRTPARVLILAESDGRRESLLDFLRASRLDPPVFDDLAAF
RASAERVGLTTGPLAAGFAWAEAGIELVTETELFAAGPTMRRRRKQEQVSDVEALIKDLS
ELQIGDPVVHAQHGIGRYRGLVNLDLGEKNPDGTPALQEFLHLEYAQGATLYVPVSQLHL
ISRYTGVSAEEAPLHRLGSGQWEKARRKAAEQVRDTAAELLDVYARRAAREGHAFRFDAQ
AYEAFANDFGFEETPDQRAAIHAVIQDMVSPRPMDRLVCGDVGFGKTEVALRAAFVAVMG
GKQVAFLAPTTLLAEQHYQTLVDRFAKWPVRIAEMSRFRTSKEITAALKGLEDGSIDIVV
GTHKLLSEKTKFKNLGLLIIDEEHRFGVRHKEAIKALRAEVDVLTLTATPIPRTLGMALE
GLRDLSVIATAPQRRLAIKTFVREENNGVIREAVLRELKRGGQVYFLHNEVETIENRRAK
LEQLLPEARIAIAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVISRA
DKFGLAQLHQLRGRVGRSHHQAYAYLLVPDIEGLTKQAAQRLEAIQQMEELGSGFYLAMH
DLEIRGAGEVLGEAQSGNITEIGFQLYNEMLAEAVRALREGKEPDLLKPLAATTEINLHA
PALLPQDYCGDVHLRLSFYKKLATAKTNEQVDHLVEEIVDRFGKLPPAAHNLIEVHRLRV
LASRYGVVKIDATPAHILITFQPNPPIDPMRIIELIQKNRHIKLAGNDRLKIERALAEPS
ARAHLVRDVLRSLGQPITAEAA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaccttccacgcctcacccccggcaagcgttttgcctcgccgcgtcccgccccgtcg
ggcgacgcgctgctgctggccgcgcttgccgcgcgcgaaaaagccgccggccgccccatg
gccatcgtcacggccgacgctgccgatgcgcagcggctgctcgccgagctgccgtttttc
gagccgggcttgcgctgcgcgctgtttccggactgggagacgctgccctacgacagtttc
tcgccgcaccaggatttgatctccgagcggctggccacgctgtggcgcatccagcagcgc
aaggctgacgacggcgccgatgtcatcctgatcccggccacgacggcgctctatcgcctc
gcgccgccgtcgtttctggccgcctacacctttcacttcaaggtcggccaaaagctcgac
gaggcgaagctgcgcgcgcagctgacgctggcgggctaccagcacgtcacgcaggtggtc
agccccggcgagtacgcggtgcgcggcggactcatcgatctctttccgatgggcgcgccg
atgccctaccgggtggacctgttcgacgacgagatcgactccatccgcaccttcgacccg
gacacgcagcgcagcctctacccggtgccggaagtgcgcctgctgcccgggcgcgagttc
ccgatggacgaggcggcgcgcacgcgctttcgcgcccgctggcgcgagctgctggagggc
gacccgaccaagagccggctgtacaaggacatcggcaacggcgtggccacggccgggatc
gaatactacctgccgctctttttcgacgagacggccacggttttcgattacctcggggac
gacgcggcgctggtgctgcacggcgacctcgacgacgcgttccagcgtttctggcaggac
acgcgcgagcgctaccggctcgtgcgcggcgaccccgaccgccccgccctgccgccggaa
acgctgttcctcacacccgaggcgttctacacccgcgccaagccctacccgcagtgggcg
ctgcgccccgcgcccgccaccgaggccctgaacacctgggcgagcgtgatcggcgctttg
cccgatctggccgcccagcgcggggctgacgatccgctgcgcaagctccacgaccacctg
cagcgtacccccgcgcgggtactgatcctggccgaaagcgacgggcggcgcgagagcctg
ctcgactttttgcgcgccagccgcctcgatccgccggtttttgacgacctcgcggccttt
cgcgccagcgccgagcgcgtcggcctgaccaccgggccgctcgcggccggctttgcgtgg
gcggaagcgggcatcgagctcgtcacggaaaccgagctctttgccgccgggccgacgatg
cgccgccgccgcaagcaggagcaggtcagcgacgtcgaggcgctgatcaaggacctgagc
gagctgcagatcggcgaccccgtggtgcacgcgcagcacggcatcggccgctaccggggt
ctcgtcaacctggacctgggcgagaaaaaccccgacggcacgcccgcgctgcaggagttt
ttgcacctggaatacgcccagggcgccacgctctacgtgccggtgtcgcagctgcacctg
atcagccgctacacgggcgtgagcgccgaagaggccccactgcaccgcctgggcagcggc
caatgggagaaagcccgccgcaaggcggccgagcaggtgcgcgacaccgccgccgagctg
ctcgacgtctatgcccgccgcgcggcgcgcgagggacacgccttccgcttcgacgcgcag
gcctacgaggcgtttgccaacgacttcggcttcgaggagacgccggaccagcgtgccgcc
attcacgcggtcatccaggacatggtcagcccgcggccgatggaccgtctcgtgtgtggc
gacgtcggctttggcaaaaccgaagtcgcgctgcgcgccgccttcgtcgcggtcatgggc
ggcaagcaggtggccttcctcgccccgacgacgctgctggccgagcagcactaccaaaca
ttggtggaccgcttcgccaagtggccggtgcgcatcgccgaaatgagccgtttccgcacg
agcaaggagatcaccgccgcgctcaaggggctggaggacggcagcatcgacatcgtcgtc
ggcacgcacaaactgctgagcgaaaagacgaaattcaaaaacctcggtctgctcatcatc
gacgaggaacaccgcttcggcgtgcgccacaaggaggcgatcaaggcgctgcgcgccgag
gtggatgtgctcacgctcaccgccacgccgatcccccgcacgctgggcatggcgttggag
gggctgcgcgacctgtcggtcatcgccaccgcgccgcagcggcgactcgcgatcaaaacc
ttcgtgcgcgaggaaaacaacggcgtcatccgcgaggcggtgctgcgcgagctcaagcgc
ggcgggcaggtgtatttcctgcacaacgaggtcgaaacgatcgagaaccgccgcgccaag
ctggaacagttgctacccgaggcgcgcatcgcgatcgcccacggccagatgcccgaacgg
gaactcgagcgcgtgatgcgcgacttcgtggcgcagcgctacaacctgctgctgtgctcg
accatcatcgagaccggcatcgacgtgcccacggccaacaccatcgtcatcagccgcgcg
gacaagttcggcctggcgcagctgcaccagttgcgcgggcgcgtcggccgcagccaccac
caggcctacgcctatctgctcgtgcccgacatcgaggggctgaccaaacaggctgcgcag
cggctggaagccatccagcagatggaggagctcggcagcggcttctacctcgcgatgcac
gacctggaaatccgcggcgcgggcgaggtgctgggcgaagcgcaaagcggcaacatcacc
gaaatcggctttcagctctacaacgagatgctggccgaggccgtgcgtgcgctgcgcgag
gggaaagagccagacctgctcaaaccgctggcggccaccaccgaaatcaacctccacgcc
cccgcgctgctgccacaggactactgcggcgacgtgcacctgcggctgagcttttacaaa
aagctcgccaccgccaagacgaacgaacaggtcgaccacctcgtggaagaaatcgtcgac
cgcttcggcaagctgccgcccgccgcgcacaacctcatcgaggtgcaccggctgcgcgtg
ctggcgagccgctacggcgtcgtcaagatcgacgccacgcccgcacacatcctcatcacc
ttccaacccaacccaccgatcgacccgatgcgcatcatcgagctgatccagaaaaaccgc
cacatcaagctcgccggcaacgaccggctcaaaatcgaacgcgcactggccgagccgtcc
gcgcgcgcgcacctggtgcgcgacgtgctgcgctcgctcggtcaacccattaccgcggag
gcggcatga
DBGET
integrated database retrieval system
