Triticum urartu (red wild einkorn wheat): 125509437
Help
Entry
125509437 CDS
T08232
Name
(RefSeq) putative DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125509437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tua03400
]
125509437
Enzymes [BR:
tua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125509437
DNA repair and recombination proteins [BR:
tua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125509437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
125509437
NCBI-ProteinID:
XP_048530376
LinkDB
All DBs
Position
5:417716103..417725252
Genome browser
AA seq
1236 aa
AA seq
DB search
MAATVRFGLLVAMFQAMTRDRTSAKKRGRLRTFLDRAYGASGRDDYFSALRLILPSLDRE
RGSYGLKEAALAAALVEALGIAKDSPDAVRLTNWRRGGGGRNAGNFSLVAAEVLQRRQGM
TSGGLTIKEVNDALDRLSASDTRSEKASVLSSMIKKTNALEMKWLLMIIIKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKWVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVGNASSAW
KKLHGKPVVAECKFDGDRIQIHKNGEEIHFFSRTFLDHSEYTSGMSKFIKENILVDRCIL
DGEMLVWDTALNRFAEFGSNQEIAKAASEGLETNRQLCYIAFDILYSGDTSVIHQSLSER
HEILRKVVKPLKGRLEILVPTGGLNTHRPPDEPCWSIFAPNIEDVEKFFKETVENRDEGI
VLKDLDSKWEPGDRTGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVS
SDDNSHPKRFLSFCRVGTGLSDEELATLVAKLKPHFSKSGTPKKTPRFYEVTNNLKERPD
VWIESPDKSVILSITSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQSFVEIVH
SSNGSMHKAEDDKSLKNDNLQNPKINKRGEKKNVSIIPSHLMKTDISGLKGETLIFANTM
FYFVNTPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRHGRIIHYS
WILDCCKQKILLRLQPKYILFLADFARHKFPEEIDSYADFYYWDIDVSDLKQIFINMDKV
TVDPSMVHRYKKKYYADERFCFFQGCCVYLYHAPLVNEDYNVISDLALKRVKQDLTMHGG
QYCSRLAPATHLVIVSVLEVYNFDILYKSFSPAERRYLHDKRLHVVSNKWLEDSVEKQMK
LPETAYNLKPDTLEEIQIERSEEKAQPSNDKTAENEEVEISHVKHARKRGRATSSSSRTV
RAAPRPVRTTRARRGNKQAKIDDGEPEEDGPGETGQDDEKSNTDPISRMEEDSSDKHQRP
PRAAPRPVRRTSARRGTRQAKIDYRESDESGPGETGEEDQKVGTDAVVKMEEDSLDENQG
PPAGAQFITLDDREPTVVKLSAAEEKTGSPKFESKGTSQRTDAGEGESMAGEKIEQMVDP
LHAMLLDMIPSLREDASSDPPAKVEHDPPRVRSSMSDNRAPVPETGGSASNPVAPAPPAG
SSSYSAGVPAPDPNPAAPKKKKVSYKDLADEFLKDW
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggtacggttcgggctcctggtggcgatgttccaggccatgacgcgggac
cgcacgtccgcgaagaagcggggccgcctccgcacgttcctcgaccgcgcctacggggcc
agcggcagggacgactacttcagcgcgctccgcctcatcctcccgtccctcgaccgcgag
cgcggctcctacggcctcaaggaggccgccctcgccgccgcgctcgtcgaagcgctcgga
atcgccaaggactcccccgacgccgtccgcctcaccaactggcgccgcgggggcggcggc
cgcaacgcgggcaacttctccctcgtcgccgccgaggtgctgcagcggaggcaaggaatg
acttctggtgggttgacaataaaggaggttaatgacgcacttgatcgtctatctgcaagt
gatactaggtctgagaaggcttcggttctttcaagtatgatcaagaaaaccaatgccctt
gaaatgaagtggcttctcatgatcattattaaagacttgaaattggggatcagtgagaag
agcatattccatgaatttcatcctgacgctgaggacttattcaatgtcacttgtgactta
aaatgggtctgtgaaaagcttaatgatcgaagtcaaaggcataaacgtcaggatatagaa
gtcggaaaggctgtgaggcctcagctagctatgagagtcggtaacgcttcatctgcatgg
aagaagcttcatggcaaaccagtggttgctgagtgcaaatttgatggcgatcgtatccaa
attcacaagaatggggaagagattcatttcttctcacggacctttcttgatcattctgaa
tatacatctgggatgtccaaatttattaaggaaaatatcctggttgacaggtgtattttg
gatggggagatgcttgtttgggatactgcgcttaatcggtttgctgaatttggctcaaac
caggaaatagcaaaggctgctagtgaggggctggagacaaatcgacagttgtgctatatt
gcttttgacattctttattctggagacactagtgttatccaccaaagtttgtcggagcgg
cacgaaattctgcggaaggttgtcaaacctttaaagggtcgtcttgagattttggttcca
acaggtggtctaaacacccatcgccccccagatgaaccatgctggtccatttttgctccc
aatattgaagacgttgagaaattcttcaaggagactgtcgaaaacagagatgagggaatt
gtactaaaggaccttgattccaaatgggaacctggtgatcgaactggaaagtggcttaaa
ctaaagcctgattatatacatgctggtgctgatctggatgttattattataggtggatat
tatggatcagggcgtcgaggaggagaggttgcacagtttttagttggtcttgcagtgtct
tcagatgataatagtcaccccaaaagatttctttcattttgtcgagtcggtactggtctc
tccgatgaagaacttgccactctagtcgcgaaactgaagccccactttagcaaaagtgga
acccccaaaaaaacacccagattttatgaagtaacaaacaatttgaaggagcggccagat
gtttggatagaaagccctgataagtcagtcatactatctataacaagtgatattcgaaca
attaaatccgaggtttttgctgccccatactgcttgaggttcccccgcattcaacgagtg
agatatgataagccatggcacgagtgccttgatgtgcaatcatttgtggagatcgtgcac
tcaagtaatgggtcaatgcacaaggcagaagatgataagagtctgaaaaacgacaactta
cagaacccaaaaataaacaaaaggggggagaagaagaatgtatcaatcatcccttcacat
cttatgaagactgacatatcaggcttaaagggcgaaaccctgatatttgcaaacacgatg
ttctattttgtcaacacccctccgtcatataacctcgactatttccataaactggttgtg
gagaatggaggatctttctcgatgaatcttaatgactctgttactcactgcatagcagcg
gagaagaaaggtatcaaatatcaggcggccatacgccacggaaggatcattcattattcc
tggatcttggactgttgcaagcaaaaaatacttcttcgtttgcaacccaagtatatcctc
tttcttgcagattttgccaggcacaaatttcctgaagagatcgactcgtacgcagatttt
tactactgggacatcgatgtttctgacctgaagcagatattcatcaacatggacaaagtt
actgtcgatccaagcatggtacaccggtacaaaaagaagtattatgcagatgaaagattc
tgcttcttccagggttgctgcgtttacttgtatcatgcacctttagtgaacgaggactac
aatgtaatatctgatcttgcactaaagagggtgaagcaggaccttacaatgcatggtggt
cagtattgcagcaggcttgctcctgctacccatttggttatagtttcagttcttgaggtg
tacaattttgacatattgtacaagagcttctctccagctgagaggcgttacctacacgac
aaaagattgcatgttgtcagtaacaagtggttagaagattcagtggagaaacaaatgaaa
ttgcctgaaaccgcctacaaccttaaaccggatacattagaagaaatacaaatcgaaagg
agtgaggaaaaggcccagccctctaatgacaagactgctgaaaatgaggaggttgaaata
tctcatgttaaacatgcaaggaaaaggggcagggcgacaagcagtagttcgagaactgta
cgggctgctcctaggccagtccgaacaacaagggctagaagaggaaataagcaggcaaaa
atagatgatggtgaacctgaagaagacggtcctggtgaaacaggtcaagatgatgaaaag
tcgaacacagatcccatctccaggatggaagaagatagcagtgacaagcaccaacgacca
cctcgagctgctcctagaccagttcgaagaacaagtgctagaagaggaacccggcaagcg
aaaatagactatcgtgaatctgacgaaagcggccctggtgaaacaggtgaagaagatcaa
aaggttggcacagatgctgtcgtaaagatggaagaagatagcctggatgaaaaccaagga
ccgcctgcaggggcccagttcatcacattggacgatcgagagcccacagtcgtcaaactg
agtgccgcagaggagaagacaggcagtccaaagttcgaaagcaaaggaacttcccaaaga
acagacgctggtgaaggagagagcatggcaggtgagaagatagaacagatggttgatcct
ctgcacgcgatgctcctcgacatgataccgtcgcttagggaagacgcgagcagcgatccc
ccagccaaagtcgagcatgatccgccgcgtgtgagaagttccatgtcggataacagggct
ccggtgcctgagacaggtggttctgcatccaatcccgtggctccggcaccgccggcagga
agttcgtcatacagtgcgggggttccagccccagatccaaatcccgcggctcccaagaag
aaaaaggtgagctacaaagatctggccgacgagtttctgaaagattggtga
DBGET
integrated database retrieval system
