Triticum urartu (red wild einkorn wheat): 125538978
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Entry
125538978 CDS
T08232
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03022
Basal transcription factors
tua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125538978
09124 Replication and repair
03420 Nucleotide excision repair
125538978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tua03021
]
125538978
03400 DNA repair and recombination proteins [BR:
tua03400
]
125538978
Transcription machinery [BR:
tua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125538978
DNA repair and recombination proteins [BR:
tua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125538978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
125538978
NCBI-ProteinID:
XP_048558267
LinkDB
All DBs
Position
2:complement(590444217..590447788)
Genome browser
AA seq
430 aa
AA seq
DB search
MYGVGVGGGGGGFNAPSTASGRRKNQEDDDDDEEEETGDGRVLEAWERAYADDRSWEALQ
EDESGLLRPIDTKNLVHSQYRRRLLLRSAAAAARIQKGLIRYLYIVIDLSKAASEMDYRP
SRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTEIGGSPESQINALMGKLECS
GDSSLQNALELVNGYLNQIPSYGHKEVLFLYSALNTCDPGDIMETIEKCKKSKVRCSVIG
LAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPSPAIAEYAAANLIKMGFPQRGA
EDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVA
PFDEVTFKLGQKGGQNCFGCQQSLINTGGQSNIHVCCPKCKHHFCFDCDIYIHESLHNCP
GCESQRSSSR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcgtcggcggcggcggaggcgggttcaacgcgccgtccacggcctcc
gggcggcgcaaaaaccaggaggacgacgacgacgacgaggaggaggagaccggcgacggc
cgcgtcctcgaggcgtgggagcgcgcctacgccgacgaccgctcgtgggaggcgctgcag
gaggacgagtccggcctgctccgccccatcgacaccaagaacctcgtccactcgcagtac
cgccgccgcctcctgctccgctccgccgccgccgcggcccgcatccagaagggcctcatc
cgctacctctacatcgtcatcgacctctccaaggcagcttcagaaatggattatcgccct
agtcgaatggctgttgttgctaagtgtgctgaggcattcataagggaattcttcgatcag
aatcccttgagccatgttgggctagtgacaattaaagatggcatttctcatcgacttacg
gagattggagggagtccagagtcacagattaacgcattgatgggcaagcttgagtgttct
ggtgattcatctctgcagaatgctctagaacttgtcaatggttacttgaaccagattcct
tcctatggtcacaaggaagtattatttttgtactccgcactgaatacatgtgatcctggt
gatatcatggagacaatagaaaaatgcaagaaatccaaagttagatgttcggttattggg
cttgctgcagaaattttcatttgcaagcatctctgtgaagagactggtggatcatatacg
gttgcactagacgagtcccacttcaaggaattgctgcttgaacatgctcctccatcacct
gccattgcagagtatgctgcagctaatttgattaagatgggttttccacagaggggagca
gaggatcttatctccatctgctcttgtcataagaaaattaagtctggtgctgaaggttac
atatgtcccagatgcaaagttaatgtctgtgagcttccgacggagtgccgaacatgtggt
ctaacacttgttagttctccacatctggcacgatcctatcaccatctcttccctgtagcg
ccatttgatgaggtgacgttcaaattaggtcaaaagggaggacaaaattgttttggctgc
cagcagagtctcattaacaccggtggccagtctaatatccatgtctgctgtccaaaatgc
aagcaccacttctgcttcgactgtgatatttacatccatgagagcttgcataactgcccc
ggttgcgagagtcagcgcagttcatctcggtag
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