Tupaia chinensis (Chinese tree shrew): 106734733 Help Entry 106734733         CDS       T02978                                  Symbol UPF1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism tup  Tupaia chinensis (Chinese tree shrew) Pathway tup03013   Nucleocytoplasmic transport tup03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tup00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     106734733 (UPF1)    03015 mRNA surveillance pathway     106734733 (UPF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tup03019]     106734733 (UPF1) Enzymes [BR:tup01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      106734733 (UPF1)     5.6.2.5  RNA 5'-3' helicase      106734733 (UPF1) Messenger RNA biogenesis [BR:tup03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      106734733 (UPF1)    mRNA cycle factors     Common to processing body (P body) and stress granule      106734733 (UPF1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 DEAD Helicase_RecD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  106734733 NCBI-ProteinID:  XP_014442764 LinkDB All DBs Position Un AA seq 1096 aa AA seqDB search MCRAGPSPEVAVFIPALSRDPLPQFDGPVDLTVGHQSGIREMHGALQWDGMAAAPGPRVV PEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA KADSVVVLLCRQPCASQSSLKDINWDSSQWQAPVPGRRLXVKIPSEQEQLRARQITAQQI NKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE SQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIK VPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIY HKLLGHEGEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS ATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALH NQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD PRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQ SLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSY LVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA LTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNT VNPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIP IPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKHRFGLPGPGQPNLPSSQASQ DVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQ GERAYQHGGVTGLSQY NT seq 3291 nt NT seq  +upstreamnt  +downstreamnt atgtgccgagcaggccccagccccgaagtggctgttttcatcccagctctgagtcgggac cctcttcctcagtttgatggccctgtggacctgaccgtcggccaccagtcaggcattagg gagatgcatggggccctgcagtgggatggcatggcggctgctcccggccctcgggtggta cccgagggcattctgcagaacggggctgtggatgacagcgtggccaagaccagccagctg ctggccgagctgaactttgaggaggatgaggaggacacctattacacgaaggacctgccc atccatgcctgcagttactgcggcatccacgaccccgcctgcgtggtgtactgcaacacc agcaagaagtggttctgcaacgggcgcgggaacacctcgggcagccacattgtaaatcac ctcgtgagggcaaaatgcaaagaggtgacgctgcacaaggatgggcccctgggggagacg gtcctggagtgctacaactgcggctgccggaacgtcttcctcctcggcttcatcccggcc aaggccgactccgtggtggtgctgctgtgcaggcagccctgcgccagccagagcagcctc aaggacatcaactgggacagctcacagtggcaggcccccgtcccaggccgccgccttnct gtcaagatcccctcggagcaggagcagctgcgggcgcggcagatcacggcccagcagatc aacaagctggaggagctctggaaggagaacccgtcggccaccctggaggacctggagaag ccgggggtggatgaggagccccagcacgtgctgctgcgctacgaggacgcctaccagtac cagaacatattcgggcccctggtcaagctggaggccgactacgacaagaagctgaaggag tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc gcctacttcactttgcccaagactgactctgacatgcggctcatgcagggcgacgagata tgcctgcggtacaaaggggacctcgcgcccctgtggaaggggatcggccacgtgatcaag gtccccgacaattacggcgacgagatcgccatcgagctgcggagcagcgtgggcgcaccc gtggaggtgacccacaacttccaggtggatttcgtgtggaagtcgacctcgttcgacagg atgcagagcgcgttgaagacgttcgccgtggacgagacctccgtgtccggctacatctac cacaagctgctgggccacgagggggaggatgtgatcatcaagtgccagctgcccaagcgc ttcacggcccaggggctccccgacctcaaccactctcaggtatatgccgtgaagacggtg ctgcagagaccgctcagcctgatccagggcccgccgggcacgggcaagactgtgacgtcg gccaccatcgtctaccacctggcccggcagggcaacgggcccgtgctcgtctgcgccccg agcaacatcgccgtggaccagctgaccgagaagatccaccagacggggctgaaggtcgtg cgcctctgtgccaagagccgtgaggccatcgactccccagtgtcgttcctggccctgcac aaccagatccggaacatggacagcatgccggagctgcagaagctgcagcagctgaaggac gagacgggggagctgtcatccgccgacgagaagcgctaccgggccctgaagcgcactgcc gagcgcgagctgctcatgaacgcagatgtcatctgctgcacgtgtgtgggcgctggcgac cctaggctggccaagatgcagttccgctccatcctgatcgacgagagcacccaggccacc gagccggagtgcatggtccccgtggtgctcggggccaagcagctgatcctcgtgggcgac cactgccagctgggcccggtggtgatgtgcaagaaggcggccaaggcggggctgtcgcag tcgctgttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtccagtac cggatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctctctgcag aacggcgtcactgcggcggatcgcgtgaagaagggctttgacttccagtggccccagccc gataagccgatgttcttctacgtgacccagggccaggaggagatcgccagctcgggcacc tcctacctgaacaggaccgaagccgcgaacgtggagaagatcaccacgaagctgctgaag gcgggcgccaagcccgaccagatcggcatcatcacgccgtacgagggccagcgctcctac ctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtggag atcgccagtgtggacgccttccagggccgcgagaaggacttcatcatcctgtcctgcgtg cgggccaacgaacaccagggcatcgggtttctgaacgacccccggcgcctgaacgtggcc ctgaccagagcaaggtacggcgtcatcatcgtgggcaacccgaaggcgctgtcgaagcag ccgctctggaaccacctgctcaattactacaaggagcagaaggtgctggtggaggggccc ctcaacaacctgcgcgagagcctcatgcagttcagcaagccccgcaagctcgtcaacacc gtcaacccgggggcccgcttcatgacgacggccatgtacgacgcccgggaggccatcatc ccagggtccgtctacgatcgcagcagccagggccggccctccaacatgtacttccagacc cacgaccagatcggcatgatcagcgccggccccagccacgtggctgccatgaacatcccc atccccttcaacctggtcatgccgcccatgccgccgcccggctacttcggccaggccaac gggccggccgcgggccggggcaccccaaaaggcaagaccggccgtggggggcgccagaaa caccgctttgggctccccgggccgggccagcccaacctgcccagcagccaggccagccag gacgtggcgtcgcagccgttctcgcagggcgccctgacgcagggctacatctccatgagc cagccctcacagatgagccagcccggcctctcccagcccgagctgtcccaggacagttac ctcggcgatgagtttaagtctcagatcgacgtggcgctgtcgcaggactccacgtaccag ggagagcgggcgtaccagcacggcggggtgaccgggctgtcccagtactag

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