Trichomonas vaginalis: TVAG_2v0166200
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Entry
TVAG_2v0166200 CDS
T01022
Name
(RefSeq) phosphorylation of RNA polymerase II C-terminal domain
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tva
Trichomonas vaginalis
Pathway
tva03022
Basal transcription factors
tva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TVAG_2v0166200
09124 Replication and repair
03420 Nucleotide excision repair
TVAG_2v0166200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
TVAG_2v0166200
03400 DNA repair and recombination proteins [BR:
tva03400
]
TVAG_2v0166200
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TVAG_2v0166200
DNA repair and recombination proteins [BR:
tva03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TVAG_2v0166200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
4771033
NCBI-ProteinID:
XP_001325283
UniProt:
A2E2N2
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All DBs
Position
IV:complement(25384831..25386260)
Genome browser
AA seq
460 aa
AA seq
DB search
MEELFKYIRKQPEDFVINLISDQDACRTYIRLLPPLSQQILFRLLYIERGFPRSEVEKWS
PKSKSNDLINAIKKLIKAHLVYIVTDTISENSYNSSIIINKRVREVLLGTYVEDKKAFVR
QKNPFAPDDQPDENFVPFDELDQSKFPTIDEKILDDFSNYQLESILSFMLKLRDNIDNEA
KKILSDAKLMEFGGNLCPKGHRFLLLSPKEQIWRIVKCYLKFTKDLHSSLRFLLKIGSME
LSKGYPITSLTPTQKELLSPFKTIGLVYIDGDYFYPTKSILNFFGKSNIFQTEGWMLIDT
NFKITAFPKSPLHTALLKKFANVTYEFPGFASAFISPNSFREALNQGTTLDDIIGFLKSN
LSHKIGSGQIPSAVMKQFYVWRDQRERLTVTHECIMRQYTNPNDANLAAQCAKQLAGYVY
GPAEKKESHYWIVITLSSIEQSYKPYLDMIQNNSENGGYI
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactatttaaatatattcgcaagcagccagaagattttgtaatcaatctcatt
tctgaccaggatgcatgcagaacgtatattagattgcttcctccattatctcaacaaatt
ctttttagacttctttatattgagcgcggatttccacgatctgaagtagaaaaatggtca
cccaagtcaaaatcaaacgacttaataaatgcaattaaaaaattaattaaagcacattta
gtttacattgtaacagacactatctcagaaaacagctataacagctcgattattattaac
aaaagagttcgtgaagttttacttggtacatatgttgaagataaaaaagcatttgtacgc
cagaaaaatccatttgctccagatgaccaaccagatgaaaatttcgttccatttgatgaa
ctagaccaatcaaagttcccaacaatcgatgaaaaaatccttgatgacttctcaaactat
caattagaatctattttaagttttatgttgaaattacgcgacaacatcgataatgaagca
aagaagatcttatcagatgccaagctcatggaatttggaggaaatctttgtccaaaaggt
cacagatttttacttttgtctccaaaggagcaaatttggagaattgttaaatgctatctc
aaattcaccaaggatttgcacagctcactcagattccttctaaaaataggttccatggaa
ttatcgaaaggatatccaattacgagtttgacgccaactcagaaagaacttctgagtcca
ttcaagactatcgggcttgtttacatcgatggagattacttctatccaacaaaatcaatt
ctaaacttctttggcaaatccaacatttttcaaacggaaggatggatgcttatcgataca
aacttcaagattacagcatttccaaagagtccattacatacagctcttcttaaaaagttc
gcaaacgtaacttacgaatttccaggttttgcatcagctttcatttctcctaacagcttc
agagaagccttaaaccaaggtactacacttgatgatatcattggattcctcaaatccaat
ctttcccacaaaattggatccggccaaattccgtctgccgttatgaagcagttttacgta
tggagagaccaaagagagaggctcacagtcactcatgagtgcatcatgaggcagtatacc
aatccaaatgatgcaaatttggccgcacaatgtgcaaagcaattggctggatatgtatac
ggtcccgctgaaaagaaggagagccattactggattgtcataactctgagctcaattgaa
cagagttacaaaccttatcttgatatgattcaaaataattccgaaaatggcggatatata
taa
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