Tachysurus vachellii: 132844789
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Entry
132844789 CDS
T09596
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
tvc
Tachysurus vachellii
Pathway
tvc03015
mRNA surveillance pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132844789
09123 Folding, sorting and degradation
03018 RNA degradation
132844789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132844789
03041 Spliceosome [BR:
tvc03041
]
132844789
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132844789
mRNA cycle factors
Stress granule specific factors
132844789
Spliceosome [BR:
tvc03041
]
Complex C
Other components
Complex C specific factors
132844789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DUF4573
PABP
RRM_5
Nup35_RRM_2
CRR42-like
Motif
Other DBs
NCBI-GeneID:
132844789
NCBI-ProteinID:
XP_060724581
LinkDB
All DBs
Position
4:complement(29086950..29092109)
Genome browser
AA seq
784 aa
AA seq
DB search
MFAVFVGDLHPEVSELMLLNRLSPAGPIESVYICRDRQTGSPLGYAYVNFQHRADAERAI
IMFNFELLLDRPMRVMWSRWEPTAKLIKGSNVIIKNLHQSIDDVALFDTFSVFGRIVSCK
VVESKGFGFIQFETPEAAAMAIRQVNGMILKGRQVTIKYFKSQEERKAEDQNQGNNLYIK
NLDDNIDTECLYLTFAQFGHLTSAKVIMENGRSKGFGFVNFTSSQDAIRAMNEINGMMWG
KKQVYVELAKRKEEGQTLLQRMFIQQFTPNLHQPVLPLYLKTSIPAVEADRSEDLVPISA
KTAAPKYNMEAVETAAPEGTTMALETAAPECTMKAVETAAPVDTVEAVASAAPEYTLKAV
ETAAPVDTMEAVETAAPECILKAVVTSSPVEAVETPEPVDAVEAAAPVDTVEAVETAAPV
DAVEAVETAAPVDTVEAVETAAPVDTVEAVETAAPVDAVETVETSAPEDTVEAVETAAPE
DTVEAVETAGPECTVEALETAAPVKTLEAVMTAAPECTVEGVMTAAPECTVEAVETAAPE
CTVEAVETAAPVNTVEAVETAEPECTVEAVETAAPVNTVEAVMAPAPECTVEAVETSAPV
YTVEAVETAAPECTVEAVETSAPVYTVEAVETAAPECTVEAVETSAPVYTVEAVETAAPE
CTVEAVETAAPECTVEAVETSAPVDTVEALETAAPVDTVEALETAAPVDTVEAVETAYIN
MFPLVEQIHPSDASKITWMVIEGKNNAEIMNMLRDPELLRSRETWKIIYRKNKNKKKKMK
KRNQ
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagtgtttgtcggtgatcttcatcctgaagtatcagagctgatgcttctaaat
aggttaagtcctgcaggaccaattgaatcggtgtacatctgcagggacagacagaccggc
tcgccgctcggttacgcctacgtcaacttccagcatcgagccgacgctgagcgagctata
attatgttcaactttgagcttcttttggacagacccatgagggtcatgtggtctcgctgg
gaacccactgcgaagttgatcaaggggagcaacgtcatcataaagaaccttcatcagtcc
atcgacgacgttgccctgtttgacaccttctccgtgttcgggaggatcgtgtcatgcaag
gttgttgaatcaaaaggcttcgggttcatccagtttgagacaccggaggctgcggcgatg
gccattaggcaggtcaatggaatgatcctgaaaggccgccaagtcaccatcaagtacttt
aagtctcaggaggagcgcaaggctgaagaccaaaaccagggcaacaacttatacatcaag
aacctggacgacaacattgacaccgagtgtctgtacttgacatttgcacaatttggacac
ctcacaagtgcaaaggtaataatggagaatgggcgttcaaagggatttggctttgtcaat
ttcacatcatctcaggatgccattagagctatgaacgagataaacggcatgatgtggggc
aagaagcaggtgtacgtggaactggctaaaaggaaagaggagggccagactctccttcag
agaatgttcatacagcagtttacaccgaacctgcaccagccagtgctgcctctctactta
aagacaagcatccctgctgttgaggcagatcgctctgaggaccttgtcccaatttccgcc
aagacagctgcaccaaaatacaacatggaggctgtggagacagcagcccctgaaggcacc
acaatggctttggagacagctgccccagaatgcaccatgaaggctgtggagacagctgcc
ccagtggacacagtggaggctgtggcatctgctgccccagaatacaccctgaaggctgtg
gagacagctgccccagtggacacaatggaggctgtggagacagctgccccagaatgcatc
ctgaaggctgtggtgacatcttccccagtggaggctgtggagacacctgagccagtggac
gcagtggaggcagctgccccggtggacacagtggaggctgtggagacagctgccccggtg
gacgcagtggaggctgtggagacagctgccccggtggacacagtggaggctgtggagaca
gctgccccggtggacacagtggaggctgtggagacagctgccccggtggacgcagtagag
acggtggagacatctgccccagaggacacagtggaggctgtggagacagctgccccagag
gacacagtggaggctgtggagacagctggcccagaatgcacagtggaggctctggagaca
gctgccccagtgaaaacactggaggctgtgatgacagctgccccagaatgcacagtggaa
ggtgtgatgactgctgccccagaatgcacagtggaggctgtggagacagctgccccagaa
tgcacagtggaggctgtggagacagctgccccagtgaacacagtggaggctgtggagaca
gctgaaccagaatgcacagtggaggctgtggagacagctgccccagtgaacacagtggag
gctgtgatggcacctgccccagaatgcacagtggaggctgtggagacatcggccccagtg
tacacagtggaggctgtggagacagctgccccagaatgcacagtggaggctgtggagaca
tcggccccagtgtacacagtggaggctgtggagacagctgccccagaatgcacagtggag
gctgtggagacatcggccccagtgtacacagtggaggctgtggagacagctgccccagaa
tgcacagtggaggctgtggagacagctgccccagaatgcacagtggaggctgtggagaca
tcggccccagtggacacagtggaggctctggagacagctgccccagtggacacagtggag
gctctggagacagctgccccagtggacacagtggaggctgtggagacagcttatataaac
atgtttccactggtagagcaaatccaccccagtgatgccagtaaaatcacctggatggtc
atagaaggaaaaaacaatgctgagatcatgaacatgttgagagatcctgagctcctgaga
tccagggaaacctggaagataatctacaggaagaacaaaaacaagaagaagaagatgaag
aaaaggaatcaatga
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