Tachysurus vachellii: 132845364
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Entry
132845364 CDS
T09596
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03013
Nucleocytoplasmic transport
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132845364 (upf1)
03015 mRNA surveillance pathway
132845364 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132845364 (upf1)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132845364 (upf1)
5.6.2.5 RNA 5'-3' helicase
132845364 (upf1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132845364 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132845364 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
YusW
AAA_22
Motif
Other DBs
NCBI-GeneID:
132845364
NCBI-ProteinID:
XP_060725305
LinkDB
All DBs
Position
1:5019678..5036811
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PEGVLQNGDDAVVKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPMPPPGYLGQLNGPATGRGAPKGKTGGRGGRQRNRGMGNHGSGQTNMANS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagaggcgtacgggccgagctcgcagactctcaccttcctggacacggaggaa
gcggagctgcttggagccgacacacagggctcggagtacgagttcaccgacttcaccctg
ccgagccagactcaaacacaaggccaaacccagagtcagctcgacaaccaggtgaacggg
cctgagggagttctgcagaacggcgatgatgcggtggtgaaaaccagtcaacttctggga
gaacttaatttcgaagaggatgaagaggacacctattacaccaaggatctccctgtgcac
gcctgcagttactgtggcattcacgatcctgcctgtgtggtgtattgcaacaccagcaag
aagtggttctgcaatggacgtggcaacacctctggcagccatattgtcaaccatttggta
cgggccaaatgcaaggaggtgaccctgcataaggacggtcctttgggggagaccgtattg
gagtgttacaactgcggctgtcgcaacgttttcctcctgggtttcattccagcaaaggct
gattctgttgtggtgctgctgtgcaggcagccatgtgccagtcagagcagtctgaaggac
attaattgggacagctcccagtggcagcctttgatccaggaccggtgttttctgtcctgg
ttggtgaagatcccatctgagcaggagcagctcagggcacgccagatcactgctcagcag
atcaacaaattggaggagctctggaaggagaatccaactgcaacacttgaggatttggag
aagcctggtgtggatgaagagcctcaacatgtgctgctgcgctatgaagatgcataccag
tatcagaacatctttgggccactggtcaaactggaggcagattacgacaagaagcttaaa
gagtcccagacccaagacaatataactgtcaggtgggacttgggactgaataaaaagagg
attgcttatttcacacttcccaagacggattcaggtgacatgcgtcttatgcaaggagat
gagatatgcctgcgctataagggagacttggctcctctttggaaggggattggacatgtc
attaaggtccctgacaactatggagatgagattgccattgagctgagaagcagcgctgga
gctcctgtcgaggtgccccacaacttccaggtggactttgtctggaagtccacttccttt
gaccgcatgcagagtgccctgaaaacatttgctgtagacgagacctcagtgtccggttac
atctatcacaagttgcttggtcatgaggtagaggatgtgatcattaagtgccagttaccc
aagcgcttcactgcccagggcctgcctgacctcaaccactctcaggtgtatgctgtgaaa
acagtgcttcagcgtcctctcagtctgatccaggggcctcctggtactggcaaaactgtt
acctcagcaactattgtttaccacctagctagacagggcaacgggccggtgctagtatgt
gctcccagcaacattgcagtggaccagctgactgagaaaattcatcaaacaggactgaag
gtggtgcgtctctgtgccaaaagccgagaggctatcgattcgcctgtgtcctttctggct
ttgcacaaccagattcgcaacatggacagcatgccagaactgcaaaaactgcaacagttg
aaggatgaaacaggagagctgtcttcctcagatgagaagcgctacagggccctgaaacgc
acagcagaaagggagctactcatgaatgcagatgtcatctgttgtacttgtgtgggtgcg
ggtgatcctcgtctggctaaaatgcaattccgctccatcctgatagatgagagtacccag
gctactgagccagagtgcatggtgcctgtagttctaggagccaagcagctgatcctggtg
ggcgatcactgccagctaggcccagtggtcatgtgtaaaaaggctgctaaggcaggtctg
tcccagtctctcttcgaaagactggtggtgctgggcatcagacccattcgcctacaggtg
cagtaccgtatgcaccctgcactcagtgctttcccctccaatatcttctatgaaggctct
ctccagaacggagtcactgctgctgaccgcatcaagaagggctttgatttccagtggcct
cagccagataagcccatgttcttctatgtgacacaaggtcaggaggagattgccagctct
ggcacgtcctacctcaacaggactgaggcagctaatgtggaaaagatcaccactcgcctt
ttgaaggctggagccaaacccgaccagattggcatcatcacgccatatgaggggcagcgc
tcctacttggtgcagtacatgcagttcagcggttcccttcatactaagctctatcaggag
gttgagatagccagcgtagatgctttccagggccgtgagaaggacttcatcattctttcc
tgcgtcagggccaatgagcaccaaggcataggctttcttaatgatcctcgcaggctgaac
gtggccctcaccagagccaggtatggcgtgatcattgtggggaatcctaaagctctgtct
aagcagcccctctggaaccacttgctaaattattacaaggagcagaaggttctggttgag
gggcctctcaacaacctgagagagagccttatgcagttcagcaaacctcgcaagctcgtt
aacaccatcaaccctggagctcgttttatgagcactgccatgtacgatgccagggaggcc
atgattcctggttcagtgtatgaccgcagcaacactggtcgtccatcgaacatgtatttc
caaactcatgaccagattgggatgattggcgcagggcccaacccaatggcctccatgaac
attcccatacccttcaaccttgttatgccccccatgccccctccgggttacctgggccag
cttaatggtccagctactggtcgtggtgctccaaagggcaaaacaggtgggcgtggaggg
cgccagaggaatcgtggcatgggtaaccatggcagtgggcagaccaacatggcaaacagc
caagccagtcaggatttggtgtctcagcccttctcccagggccccttgacccagggatac
attaccatgagccagccctcacagatgagccagccaggtctttcccagcctgaactttcc
caggacagttacctgggtgatgagttcaagtcacagatggacgtggctctgtcccaggat
tctacgtaccagggtgaacgggcataccagcatggaggcgtgactggactctctcagtac
tag
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integrated database retrieval system
