Tachysurus vachellii: 132847113
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Entry
132847113 CDS
T09596
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03030
DNA replication
tvc03410
Base excision repair
tvc03420
Nucleotide excision repair
tvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132847113 (lig1)
03410 Base excision repair
132847113 (lig1)
03420 Nucleotide excision repair
132847113 (lig1)
03430 Mismatch repair
132847113 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvc03032
]
132847113 (lig1)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132847113 (lig1)
Enzymes [BR:
tvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132847113 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
132847113 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132847113 (lig1)
DNA replication proteins [BR:
tvc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132847113 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132847113 (lig1)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132847113 (lig1)
NER (nucleotide excision repair)
Other NER factors
132847113 (lig1)
MMR (mismatch excision repair)
Other MMR factors
132847113 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
132847113
NCBI-ProteinID:
XP_060728079
LinkDB
All DBs
Position
1:complement(11125957..11145851)
Genome browser
AA seq
970 aa
AA seq
DB search
MQRSISSFFQPKKFKEKDGLPTGSSESVKSPLRPQNIDPECESPVKMSKRSRAIIDSDDE
EPQTLKDVSKQNGKQAATPVSLVKDMTSPPSAKPVVTMTASVVSGTSDTLEMPVTPNSTS
PSGIPKRKTARKQFPKRKLDSRSDGEREKEEDGKETEGGQESKRAKTERDVEQMVTDEEA
VEVEEKNSNTMKKELLKAKDEEKMNVTNAEKQNQRQSDENEQEGETQEANGLKKDTKEEK
GSPERVMEKDAGAEKIGGAAKKKAINSFFAPRKPAVKLEKSEEKSDVQKNDGEKPEAATV
SDKKEKNGDKNMELANQRQYDPSKAHYHPIDDACWNKSQRVPYLAVARTFEKIEEDSGRL
RNIETLSNFLRSVILLSPDDLLCCVYLCQNQLGPAHQGLELGVGETVLMKAVAQATGRQL
DKIKTEAQEKGDLGLVAESSRSNQRMMFAPANLTAMGVFSKLKEIGNMSGNSAMNKKIDI
IKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPGQEFPPAVTDAGKR
MSAESRRAWLEEKGLILKQTYCEMPNYDAIIPVLLKFGIDELPNHCRLTPGVPLRPMLAH
PTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVYVFSRNQEDNTSKYPDIISRIP
QIKQKSVLSCVLDSEVVAWDREKKQIQPFQVLTTRKRKDVEASEIKVQVCVYAFDLLYLN
GESLVREPFIKRRALLRQSFMEKEGEFVFACYLDSDSTESIAEFLEQSIRDSCEGLMVKT
LEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVLGAYLGKGKRAGSYGGFLLGCYDEE
NEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQTAEPDVWLDAVQVWEVKC
ADLSLSPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQIADLYRKQQQIQNQ
GEKADLEDYY
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcgtctttctttcagccaaagaagtttaaagagaaggatggcctg
ccaacagggagctctgagtcagttaaaagccccctcaggcctcagaacattgatccggaa
tgtgagtcaccagtgaagatgagtaaacggagtcgagcaatcatagacagtgatgatgaa
gagccgcagactttaaaagatgtctccaaacagaatggaaagcaagcagccacaccagtt
agccttgttaaggacatgaccagtccgccctctgcaaagcccgttgttaccatgacagcc
tctgttgtttcgggaacttctgacacacttgaaatgcctgttaccccaaattccacttca
ccctctggcatccccaaacgcaaaactgcccgtaagcagtttcccaagagaaaattggat
agcaggagtgatggagagagagaaaaagaagaggatggaaaagagaccgagggaggacag
gagagtaaacgagcaaaaacagaaagagatgttgaacaaatggtgactgatgaagaggct
gtggaggtggaggaaaagaacagcaatacaatgaagaaagaactgcttaaagcaaaggat
gaggaaaaaatgaatgtgactaatgctgagaaacagaatcaacgacagagcgatgaaaat
gaacaggaaggagagacgcaagaggcgaatggattgaaaaaggatacaaaggaggaaaaa
ggcagtcctgaaagagtgatggagaaggatgctggggctgagaagatagggggagctgct
aagaaaaaagccatcaacagtttctttgcacccagaaaacctgcagtaaagctggaaaaa
tcagaagagaaaagtgatgtacagaagaacgatggtgaaaagcctgaagctgcgactgtt
tctgataagaaagaaaagaacggtgataagaatatggaacttgcaaaccagagacaatat
gatccttctaaagctcactatcatcccattgatgatgcttgctggaataagagtcagaga
gttccatatcttgctgttgctcgaacctttgagaagattgaagaagattctggcaggttg
agaaacattgagacactgtccaactttttacgctctgttatcctgctctctccagatgac
ctcttatgctgtgtgtacctatgtcaaaatcagcttggtcctgcgcaccaggggctagag
ctaggtgtgggggaaacggtactgatgaaggctgttgcccaggcaactgggcgtcagttg
gacaaaatcaagactgaggcccaagaaaaaggtgacctgggattggtagctgagagttcc
cgtagtaatcagagaatgatgtttgcaccagcaaatctgactgctatgggtgtgtttagt
aaactgaaggagattggcaacatgagcggaaactctgcaatgaataagaaaattgacata
attaagggtctgtttgtggcttgtcgtttctcagaggctagatacattgtacggtcatta
gcaggcaaattgaggattggattggctgagcagagtgttttagcagctctaagtcaagca
gtatgtctaagtccaccaggtcaagaattcccgccagctgtgactgatgcaggaaagagg
atgagtgcagagagcaggagagcatggcttgaggaaaaaggtcttatccttaagcagact
tactgtgaaatgccaaattatgatgccattattcctgtcttgttaaagtttggcatagat
gaactgcccaatcactgcagacttactccaggtgtgccactgcgccccatgttagctcat
ccaactaagggagtaggggaggtgatgaaaaggtttgatgaagctgctttcacttgtgaa
tacaagtatgatggcgagagagcacagattcacatccttgagagtggtgaggtttatgtt
tttagccgaaaccaagaggacaacaccagcaaataccctgacatcatttcgcggatcccg
cagataaagcagaaatctgttcttagctgtgtcttggactctgaggtggttgcatgggac
agagagaaaaagcagattcaaccctttcaagttcttaccacacgcaaacggaaggatgtg
gaagcatctgagattaaggtgcaggtttgtgtgtatgcctttgacctgctctacttaaat
ggagagtctctggtacgggagccatttattaagcgccgagctttgttaagacagagtttc
atggagaaggagggagagtttgtctttgcttgttatcttgactctgacagcaccgaatcc
atagcagagttcctggagcaatccatacgagactcttgcgaaggcttgatggtcaaaacc
ctggagaaagacgccacctatgaaattgccaagcgctctcataactggcttaagctgaag
aaggattatctggaaggtgtgggtgacacagtggatctgtgtgtgcttggtgcctatcta
gggaaggggaagagagccggtagttatgggggtttcctgcttggctgctatgatgaagag
aatgaggagtttcagtctgtctgtaagataggaacaggtttcaaagatgaagatctggag
cagcattacaatttcttaaaggagcacatcctccccaagccccgcccctactacagagtg
gatcaaaccgcagagccggatgtttggctggatgctgtacaagtttgggaagtgaagtgt
gctgacctgtcactgtctccagtttacaaggcagcaatgggattggtggacccagacaaa
gggatttcccttcgctttccccgattccttcgcataagagatgacaaaaaaccagaggat
gctactacaggagcacagattgctgatctctacagaaagcagcagcagattcagaatcaa
ggagaaaaggctgatttagaggattactactga
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