KEGG   Tachysurus vachellii: 132848728
Entry
132848728         CDS       T09596                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc04510  Focal adhesion
tvc04512  ECM-receptor interaction
tvc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132848728 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132848728 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132848728 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tvc04147]
    132848728 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:tvc00536]
    132848728 (col4a6)
Exosome [BR:tvc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   132848728 (col4a6)
Glycosaminoglycan binding proteins [BR:tvc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   132848728 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 132848728
NCBI-ProteinID: XP_060730669
LinkDB
Position
7:complement(17585866..17658874)
AA seq 1669 aa
MKLWLWVFTLVLCLDSTYAGSESNEPCAGRDCTGKCPCPPIKGSRGQPGTLGPTGPPGPE
GFIGAPGPVGPKGERGHGGHSGPSGPKGDKGPVGVPGFPGIDGIPGHPGSDGPPGLPGAD
GCNGTQGDPGFSSSFPGRPGNPGPPGLPGVKGQKGEPRLISTSTVPVGPVGEPGLPGPVG
FPGPIGPFGLPGFPGRPGPPGLPGQKGNPGQGYEGERGEKGDVGLPGLRGAPAALLGSPA
ISTINKGEKGDVGYPGVSGPPGPQGPPGPYGYGGEVGEKGIPGLPGLRGPPGFNGPLGED
GPKGYTGSPGLFGLPGTSGPKGYRGEPGPQGPPAYVNELGLFLKGPRGDPGFDGLPGLTG
DTGLPGPPGPPGDPGSSSFQTGGPGFPGFPGSTGPKGERGDPGLPSFSPDGSPGVRGPPG
PTGSPGPRGTTQTSVFPGDQTGPPGIKGSRGQLGDKGAKGLKGDVGTCDCFGEDISGRMG
SQGVQGLPGFAGLSGRKGEVGDIGPSGLRGPQGPSGRPGEHGFAGIKGEKGNSYYAVRQG
QKGDIGQSGPAGPTGDIGQPGRNGAPGFPGAPGPPGDAGFGVPGNKGYPGPPGYKGRPGS
PGEPGIGYPGIPGVRGSPGDFGFNGLPGLPGPPGPKGLSVPCINPGDPGNPGFPGLPGVP
GPKGQHGPPGPSGRPGIAGSKGERGDPGSGGQPGAQGFPGTRGDPGLPGTSANGLPGAPG
KDGRPGLQGTKGEPGEVLGAAPGISGPPGLTGEFGDKGLPGTPGLPGRQGFDGSSGITGP
KGVRGNSGFPGTPGPPGPPGVILSDVTGPSGPPGNPGFPGPPGFPGLKGERGNTGRQGLG
RKGFPGSPGIPGTKGQMGRPGDSVSGRNGQRGRPGVKGEKGSHGLLGFPGSPGLFGATGQ
TGRKGQPGFPGSDGIPGENGPKGFKGDTGEPGLQGPSAPPSPVIRLKGDRGAPGPTGLPG
FPGPRGDKGFPGLPGSPGFPGQPGLADLAKGLPGDPGFQGRPGSSGFSGPKGSPGVLGFP
GMPGPRGDDGVPGLFGSPGALGLAGNKGQKGDSTGAPGAPGRKGPVGDFGFPGLPGLTGD
QGSQGFPGSFGYPGQKGQPGSPGTPGQRGSPGLQGNRGLPGFPGPRGQDGEQGFPGSPGR
RGERGLSGAPGLDGLNGLSGAKGPPGVPGGVVSGQSGAPGLNGLKGERGSSLPGSPGFLG
VKGAKGDTGYPGQPGFPGPSGPPGLPSLPSGILAPPGDAGLPGLDGERGLVGPTGPPGPA
GPGTEQGDRGDPGFPGTPGISGKTGEPGFAGERGPTGNPGFKGPRGDPGVSGLAGRPGLT
GDQGRYGDKGAKGTAGKPGSKGLPGTVFPPEVKELPAGVPGQQGPPGLPGYTGSQGQPGF
PGRPGPKGRTGSIGKPGRTGPPGKSGHIGDPGLPGYQGHVGYTGSPGRQGQAGPPGMPGR
TIGIGYTLVKHSQSSQVPMCPQGMNKLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTI
PFLYCTANELCYYASRNDKSYWLSTTAPIPMMPVANEQIVSYISRCSVCEAPSQAVAVHS
QDITIPPCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGT
CFFFNNKHSFWLTTVQPERQFTKSPDSETLKGDQYRGRVSRCQVCMKIL
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgaagctttggctttgggtttttacacttgtcttgtgtctggactctacatacgcagga
tcagagtcaaatgagccatgtgcagggcgtgactgtactggaaaatgtccctgtcctccg
ataaaaggtagcaggggtcagccagggactttagggccaactggaccccctggccctgaa
ggctttattggggccccaggtcctgttggacctaaaggagaaagagggcacggtggtcac
tcaggaccatctggacccaaaggggacaagggtccagtgggtgttcctggctttccaggt
atcgatggtattcctggtcacccaggaagtgacggaccaccaggactgccaggagcagat
ggatgtaatggcacacaaggtgaccctggtttctccagcagcttccctggaagacctggc
aaccctggaccaccaggattacctggcgtcaaagggcaaaaaggagagccacggctaatt
tctacaagcacggttcccgttggtcctgttggtgaacccggtttgcctggtccagtcgga
ttccctggacccatcggccccttcgggttacctggtttccctggacgtccaggtccccca
ggtcttcctgggcaaaaaggaaatcctggacagggttatgaaggagagagaggagagaag
ggggatgtgggtctgccgggactcaggggtgctccggctgctctgttaggctcaccagct
ataagcacaatcaacaaaggagagaagggtgatgttggctatcctggtgtttcaggaccc
ccaggaccgcaaggacctccaggaccatatggctacggtggggaagttggagagaaggga
attcctggattacctggtttgaggggtcctcctggctttaatggaccacttggagaagat
ggcccaaaggggtatactgggagccctggcctctttggattaccaggcacttcaggccct
aaaggataccggggagagccaggtccacaagggccacctgcctatgttaatgaactagga
ttatttttaaaaggtcctcgaggagatcctggttttgatggcttaccaggcttgactgga
gatacaggtttaccaggacctcctggacctccaggtgaccctggatcttcatccttccaa
acaggcggtccaggctttcctggcttccctggatctactggacctaagggagagagggga
gacccaggtcttccaagcttcagtcctgatggttcacctggagttagagggccacctgga
cctactggatcacctggacctcgaggcacaactcagacatctgtgtttcccggggaccag
actggaccaccaggcataaaaggcagcagaggtcaactgggagataaaggagcaaaagga
ctaaagggtgatgttggaacttgtgattgctttggtgaagacatctctggcaggatgggc
tctcaaggagttcaagggctccctggttttgcagggctcagtgggaggaaaggagaggtt
ggcgatatagggccttcaggattgcgtggaccacaggggccaagtggtcgtcctggagag
catggctttgctgggattaaaggagagaaaggaaactcttattatgctgttagacaagga
cagaagggtgatattggtcagtcagggcctgctggtcctacaggtgatatcggccaacct
ggaagaaatggagcccctggatttcctggagcaccaggaccaccgggagatgctggattt
ggggtgcctggtaacaaaggatatcctggacctcctggatacaagggtcgcccaggttca
cctggtgagcctggcattggttacccaggcatccctggtgttagagggtctccaggtgac
tttggtttcaatgggcttcccgggctgcctggccctccaggaccaaaaggactgtcagtg
ccctgcataaatccaggagaccctggtaatccaggtttccctggactgcccggagtgcct
ggcccgaaaggacagcatggtccaccaggaccaagtggaaggccaggtattgctgggtca
aaaggtgagcgaggagatccaggcagtggaggtcaacctggagcacaaggcttccctggg
acaagaggagatccaggtttaccaggtacttcagcaaatggccttccaggtgctccaggt
aaagatggacgacctggtttgcaaggaacaaaaggagaacctggtgaggttttaggggca
gctccagggatatctggacctccaggactaacaggagagtttggagacaagggcctacca
ggcactcctggtttaccaggcagacaaggttttgatggttccagtggtatcacaggtcca
aagggtgtgcgtggtaacagtggcttcccaggaactccagggccaccaggtccaccaggt
gtgatcctttctgatgtcactggaccttcagggcctcctggcaatcctggattccctgga
cctccaggtttcccgggactcaagggtgaaagaggaaatacaggacgacaaggcttgggt
agaaagggatttcctggatcacctggaattccaggaacaaaaggacaaatggggcgtcct
ggagattctgtttcaggtcgtaatggccaacgaggaagaccaggggtaaaaggggagaag
ggatcacatggattgttgggattccctggatcacctggactttttggagctaccggacag
acagggcgtaaaggtcaacctggatttccaggatcggatggcatacctggagaaaatggg
cccaaaggttttaaaggcgacactggagaaccaggcctacaaggaccttctgctccaccc
tctccagttattcggttaaagggggacagaggtgctcctgggcctaccggactacctgga
tttccaggacctcgaggtgataagggattcccagggttacctggtagtccaggctttcct
ggtcagccaggattggctgaccttgcaaagggtctacctggtgatccaggtttccaaggg
cgcccaggttcttcaggattttcaggacctaaaggttcacctggtgttttaggtttccct
ggcatgcccggacctaggggtgatgatggagttcctggtttgtttggatcacctggtgct
ttaggattggcgggaaacaaaggtcagaaaggagactctactggagcacctggggcccct
ggacgaaagggaccggtgggagattttggattccctggtctcccaggccttactggtgat
caaggttctcagggttttccaggaagttttggatatcctgggcagaaaggtcaacctgga
agtccaggaacacctggacaaagaggttcacctgggctccaaggcaataggggtctaccc
ggctttccgggaccaagaggacaggacggtgaacaaggtttccctggttctccaggtcgg
cgaggagagagaggtttatctggagcccctggtttagatggactcaatggactttcaggg
gccaaaggaccaccaggagtacctggtggagtagtgagcggtcagtctggagccccagga
ttgaatggacttaagggagaaagaggctcatcactgcctggatcaccaggatttcttgga
gtaaagggagccaaaggagatactggttaccctggacagcccggcttcccaggtccttca
ggtcctcctggtttaccatctcttcctagtggcatccttgctccaccaggagatgctggt
ctacctggattagatggtgaaagaggtcttgttggacccactggtcctcctggtccagct
ggccctggaacagaacagggtgacagaggagatcctggatttcctggaacacctggaatc
tctgggaaaactggcgaacctggatttgcaggagaacgtgggccaactggcaacccagga
tttaaaggaccgagaggtgaccctggagttagtggattagcaggacgtccaggcttaact
ggagatcagggaagatatggtgacaaaggagcaaaaggaactgcaggtaaacctggtagc
aaaggccttccaggaactgtttttccacccgaagtaaaagaattgcctgctggggtgcct
ggtcaacaaggacctcctggccttcctggttatacaggatcacaaggccaacctggcttc
cctggacgtccaggacccaaaggaaggactggatcaattggcaaacctggtcgcaccggt
ccacccggaaaatcaggacacattggagaccctggacttccaggatatcaaggacatgtt
ggttacacaggttcacctggtaggcagggacaagcaggtcctccaggtatgcctggacgt
accattgggatcggctacactctggtaaaacacagccagtccagtcaagtgccaatgtgc
cctcagggcatgaacaagttgtgggatggctacagcttgctttatgtagaaggacaggag
aaggcgcataaccaagacctaggattggccggctcctgtctaccacgtttcagcactatt
cccttcctttactgtacagccaacgaactctgttattatgccagccgcaatgacaagtcc
tactggctgtccacaacagcacctattcctatgatgcctgtggccaatgagcaaattgtt
tcgtacatcagccgctgttcagtgtgcgaagccccatctcaagctgtggccgtacacagc
caggacatcactattcccccatgtccacaggggtggaggagcctgtggattggttattca
ttccttatgcacacggctgcaggggctgagggaggtggccagtccctcgtttcccctggt
tcctgtttagaagacttccgtgcaacaccttttattgaatgcaacggtgctcggggcacc
tgcttcttcttcaacaacaaacatagcttctggctaactactgttcaaccagaaaggcag
tttacaaaaagtcctgattcagagacactgaagggagatcagtaccgtggccgcgtcagc
cgctgccaggtctgcatgaagatcttgtaa

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