Tachysurus vachellii: 132848728
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Entry
132848728 CDS
T09596
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132848728 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132848728 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132848728 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvc04147
]
132848728 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132848728 (col4a6)
Exosome [BR:
tvc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132848728 (col4a6)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132848728 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132848728
NCBI-ProteinID:
XP_060730669
LinkDB
All DBs
Position
7:complement(17585866..17658874)
Genome browser
AA seq
1669 aa
AA seq
DB search
MKLWLWVFTLVLCLDSTYAGSESNEPCAGRDCTGKCPCPPIKGSRGQPGTLGPTGPPGPE
GFIGAPGPVGPKGERGHGGHSGPSGPKGDKGPVGVPGFPGIDGIPGHPGSDGPPGLPGAD
GCNGTQGDPGFSSSFPGRPGNPGPPGLPGVKGQKGEPRLISTSTVPVGPVGEPGLPGPVG
FPGPIGPFGLPGFPGRPGPPGLPGQKGNPGQGYEGERGEKGDVGLPGLRGAPAALLGSPA
ISTINKGEKGDVGYPGVSGPPGPQGPPGPYGYGGEVGEKGIPGLPGLRGPPGFNGPLGED
GPKGYTGSPGLFGLPGTSGPKGYRGEPGPQGPPAYVNELGLFLKGPRGDPGFDGLPGLTG
DTGLPGPPGPPGDPGSSSFQTGGPGFPGFPGSTGPKGERGDPGLPSFSPDGSPGVRGPPG
PTGSPGPRGTTQTSVFPGDQTGPPGIKGSRGQLGDKGAKGLKGDVGTCDCFGEDISGRMG
SQGVQGLPGFAGLSGRKGEVGDIGPSGLRGPQGPSGRPGEHGFAGIKGEKGNSYYAVRQG
QKGDIGQSGPAGPTGDIGQPGRNGAPGFPGAPGPPGDAGFGVPGNKGYPGPPGYKGRPGS
PGEPGIGYPGIPGVRGSPGDFGFNGLPGLPGPPGPKGLSVPCINPGDPGNPGFPGLPGVP
GPKGQHGPPGPSGRPGIAGSKGERGDPGSGGQPGAQGFPGTRGDPGLPGTSANGLPGAPG
KDGRPGLQGTKGEPGEVLGAAPGISGPPGLTGEFGDKGLPGTPGLPGRQGFDGSSGITGP
KGVRGNSGFPGTPGPPGPPGVILSDVTGPSGPPGNPGFPGPPGFPGLKGERGNTGRQGLG
RKGFPGSPGIPGTKGQMGRPGDSVSGRNGQRGRPGVKGEKGSHGLLGFPGSPGLFGATGQ
TGRKGQPGFPGSDGIPGENGPKGFKGDTGEPGLQGPSAPPSPVIRLKGDRGAPGPTGLPG
FPGPRGDKGFPGLPGSPGFPGQPGLADLAKGLPGDPGFQGRPGSSGFSGPKGSPGVLGFP
GMPGPRGDDGVPGLFGSPGALGLAGNKGQKGDSTGAPGAPGRKGPVGDFGFPGLPGLTGD
QGSQGFPGSFGYPGQKGQPGSPGTPGQRGSPGLQGNRGLPGFPGPRGQDGEQGFPGSPGR
RGERGLSGAPGLDGLNGLSGAKGPPGVPGGVVSGQSGAPGLNGLKGERGSSLPGSPGFLG
VKGAKGDTGYPGQPGFPGPSGPPGLPSLPSGILAPPGDAGLPGLDGERGLVGPTGPPGPA
GPGTEQGDRGDPGFPGTPGISGKTGEPGFAGERGPTGNPGFKGPRGDPGVSGLAGRPGLT
GDQGRYGDKGAKGTAGKPGSKGLPGTVFPPEVKELPAGVPGQQGPPGLPGYTGSQGQPGF
PGRPGPKGRTGSIGKPGRTGPPGKSGHIGDPGLPGYQGHVGYTGSPGRQGQAGPPGMPGR
TIGIGYTLVKHSQSSQVPMCPQGMNKLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTI
PFLYCTANELCYYASRNDKSYWLSTTAPIPMMPVANEQIVSYISRCSVCEAPSQAVAVHS
QDITIPPCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGT
CFFFNNKHSFWLTTVQPERQFTKSPDSETLKGDQYRGRVSRCQVCMKIL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggctttgggtttttacacttgtcttgtgtctggactctacatacgcagga
tcagagtcaaatgagccatgtgcagggcgtgactgtactggaaaatgtccctgtcctccg
ataaaaggtagcaggggtcagccagggactttagggccaactggaccccctggccctgaa
ggctttattggggccccaggtcctgttggacctaaaggagaaagagggcacggtggtcac
tcaggaccatctggacccaaaggggacaagggtccagtgggtgttcctggctttccaggt
atcgatggtattcctggtcacccaggaagtgacggaccaccaggactgccaggagcagat
ggatgtaatggcacacaaggtgaccctggtttctccagcagcttccctggaagacctggc
aaccctggaccaccaggattacctggcgtcaaagggcaaaaaggagagccacggctaatt
tctacaagcacggttcccgttggtcctgttggtgaacccggtttgcctggtccagtcgga
ttccctggacccatcggccccttcgggttacctggtttccctggacgtccaggtccccca
ggtcttcctgggcaaaaaggaaatcctggacagggttatgaaggagagagaggagagaag
ggggatgtgggtctgccgggactcaggggtgctccggctgctctgttaggctcaccagct
ataagcacaatcaacaaaggagagaagggtgatgttggctatcctggtgtttcaggaccc
ccaggaccgcaaggacctccaggaccatatggctacggtggggaagttggagagaaggga
attcctggattacctggtttgaggggtcctcctggctttaatggaccacttggagaagat
ggcccaaaggggtatactgggagccctggcctctttggattaccaggcacttcaggccct
aaaggataccggggagagccaggtccacaagggccacctgcctatgttaatgaactagga
ttatttttaaaaggtcctcgaggagatcctggttttgatggcttaccaggcttgactgga
gatacaggtttaccaggacctcctggacctccaggtgaccctggatcttcatccttccaa
acaggcggtccaggctttcctggcttccctggatctactggacctaagggagagagggga
gacccaggtcttccaagcttcagtcctgatggttcacctggagttagagggccacctgga
cctactggatcacctggacctcgaggcacaactcagacatctgtgtttcccggggaccag
actggaccaccaggcataaaaggcagcagaggtcaactgggagataaaggagcaaaagga
ctaaagggtgatgttggaacttgtgattgctttggtgaagacatctctggcaggatgggc
tctcaaggagttcaagggctccctggttttgcagggctcagtgggaggaaaggagaggtt
ggcgatatagggccttcaggattgcgtggaccacaggggccaagtggtcgtcctggagag
catggctttgctgggattaaaggagagaaaggaaactcttattatgctgttagacaagga
cagaagggtgatattggtcagtcagggcctgctggtcctacaggtgatatcggccaacct
ggaagaaatggagcccctggatttcctggagcaccaggaccaccgggagatgctggattt
ggggtgcctggtaacaaaggatatcctggacctcctggatacaagggtcgcccaggttca
cctggtgagcctggcattggttacccaggcatccctggtgttagagggtctccaggtgac
tttggtttcaatgggcttcccgggctgcctggccctccaggaccaaaaggactgtcagtg
ccctgcataaatccaggagaccctggtaatccaggtttccctggactgcccggagtgcct
ggcccgaaaggacagcatggtccaccaggaccaagtggaaggccaggtattgctgggtca
aaaggtgagcgaggagatccaggcagtggaggtcaacctggagcacaaggcttccctggg
acaagaggagatccaggtttaccaggtacttcagcaaatggccttccaggtgctccaggt
aaagatggacgacctggtttgcaaggaacaaaaggagaacctggtgaggttttaggggca
gctccagggatatctggacctccaggactaacaggagagtttggagacaagggcctacca
ggcactcctggtttaccaggcagacaaggttttgatggttccagtggtatcacaggtcca
aagggtgtgcgtggtaacagtggcttcccaggaactccagggccaccaggtccaccaggt
gtgatcctttctgatgtcactggaccttcagggcctcctggcaatcctggattccctgga
cctccaggtttcccgggactcaagggtgaaagaggaaatacaggacgacaaggcttgggt
agaaagggatttcctggatcacctggaattccaggaacaaaaggacaaatggggcgtcct
ggagattctgtttcaggtcgtaatggccaacgaggaagaccaggggtaaaaggggagaag
ggatcacatggattgttgggattccctggatcacctggactttttggagctaccggacag
acagggcgtaaaggtcaacctggatttccaggatcggatggcatacctggagaaaatggg
cccaaaggttttaaaggcgacactggagaaccaggcctacaaggaccttctgctccaccc
tctccagttattcggttaaagggggacagaggtgctcctgggcctaccggactacctgga
tttccaggacctcgaggtgataagggattcccagggttacctggtagtccaggctttcct
ggtcagccaggattggctgaccttgcaaagggtctacctggtgatccaggtttccaaggg
cgcccaggttcttcaggattttcaggacctaaaggttcacctggtgttttaggtttccct
ggcatgcccggacctaggggtgatgatggagttcctggtttgtttggatcacctggtgct
ttaggattggcgggaaacaaaggtcagaaaggagactctactggagcacctggggcccct
ggacgaaagggaccggtgggagattttggattccctggtctcccaggccttactggtgat
caaggttctcagggttttccaggaagttttggatatcctgggcagaaaggtcaacctgga
agtccaggaacacctggacaaagaggttcacctgggctccaaggcaataggggtctaccc
ggctttccgggaccaagaggacaggacggtgaacaaggtttccctggttctccaggtcgg
cgaggagagagaggtttatctggagcccctggtttagatggactcaatggactttcaggg
gccaaaggaccaccaggagtacctggtggagtagtgagcggtcagtctggagccccagga
ttgaatggacttaagggagaaagaggctcatcactgcctggatcaccaggatttcttgga
gtaaagggagccaaaggagatactggttaccctggacagcccggcttcccaggtccttca
ggtcctcctggtttaccatctcttcctagtggcatccttgctccaccaggagatgctggt
ctacctggattagatggtgaaagaggtcttgttggacccactggtcctcctggtccagct
ggccctggaacagaacagggtgacagaggagatcctggatttcctggaacacctggaatc
tctgggaaaactggcgaacctggatttgcaggagaacgtgggccaactggcaacccagga
tttaaaggaccgagaggtgaccctggagttagtggattagcaggacgtccaggcttaact
ggagatcagggaagatatggtgacaaaggagcaaaaggaactgcaggtaaacctggtagc
aaaggccttccaggaactgtttttccacccgaagtaaaagaattgcctgctggggtgcct
ggtcaacaaggacctcctggccttcctggttatacaggatcacaaggccaacctggcttc
cctggacgtccaggacccaaaggaaggactggatcaattggcaaacctggtcgcaccggt
ccacccggaaaatcaggacacattggagaccctggacttccaggatatcaaggacatgtt
ggttacacaggttcacctggtaggcagggacaagcaggtcctccaggtatgcctggacgt
accattgggatcggctacactctggtaaaacacagccagtccagtcaagtgccaatgtgc
cctcagggcatgaacaagttgtgggatggctacagcttgctttatgtagaaggacaggag
aaggcgcataaccaagacctaggattggccggctcctgtctaccacgtttcagcactatt
cccttcctttactgtacagccaacgaactctgttattatgccagccgcaatgacaagtcc
tactggctgtccacaacagcacctattcctatgatgcctgtggccaatgagcaaattgtt
tcgtacatcagccgctgttcagtgtgcgaagccccatctcaagctgtggccgtacacagc
caggacatcactattcccccatgtccacaggggtggaggagcctgtggattggttattca
ttccttatgcacacggctgcaggggctgagggaggtggccagtccctcgtttcccctggt
tcctgtttagaagacttccgtgcaacaccttttattgaatgcaacggtgctcggggcacc
tgcttcttcttcaacaacaaacatagcttctggctaactactgttcaaccagaaaggcag
tttacaaaaagtcctgattcagagacactgaagggagatcagtaccgtggccgcgtcagc
cgctgccaggtctgcatgaagatcttgtaa
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