Tachysurus vachellii: 132848729
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Entry
132848729 CDS
T09596
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132848729 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132848729 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132848729 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvc04147
]
132848729 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132848729 (col4a5)
Exosome [BR:
tvc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132848729 (col4a5)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132848729 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132848729
NCBI-ProteinID:
XP_060730670
LinkDB
All DBs
Position
7:17659584..17704512
Genome browser
AA seq
1683 aa
AA seq
DB search
MNQKLKSLQKFAVLLFISLSIGVQQSESAVCHGCGTGSKCDCTGVKGVRGDRGFPGQSGH
PGLPGFPGPEGPIGPRGEKGDDGPPGPSGPKGIRGPPGLPGFAGTPGVPGLPGLDGPPGP
KGIAGCNGTKGDRGLPGSPGFPGIDGAPGLRGEAGLKAKPGEVIISETLGTSGGTGILGL
PGPKGEPGRPGLQGPSGPQGPRGYDGPPGPPGPQGPKGNMGLNFQGPKGEKGETGLQGPP
GPPGQVDQLIGETDGVILRGEKGDRGPPGPNGYPGSPGPPGPYGGPKGEKGEPGEFGKRG
KPGKDGDPGPPGLQGVPGDPGVPGLPGGIGERGDKGERGLPGPPGVVSPSTLNQVGPKGD
PGLSGNPGRKGEPGISGVPGPPGQPGRAGIGVQGPPGPPGYPGERGQKGDQGSPGASLPG
SPGRPGPQGFQGLPGPPGPPGISTGGENCLPGPTGLPGLNGDPGYPGETGQKGEKGDTCV
NCFSSGNLIPGPQGPPGPPGPPGSPGFPGYKGDRGSPGGPGSMGPPGLPGLQGLSGAPGE
KGDPGEAVSFDGMKGDKGDTGFPGPPGLPGRDGAPGRDGSPGLPGPKGAPGSLLLKGERG
PAGEPGPSGSPGDRGLPGPPGFGPQGPPGEKGFQGVSGRQGPPGPPGQKGESGLALSQKG
EPGPRGTDGEPGRPGNPGDPGQPGSPGFPGLSGQKGEPGIPGIGLPGPPGPKGFPGIAGS
PGSPGRPGPPGVDGLPGVSGPRGPKGEPGFGIPGPPGPPGLPGSKGFQGPKGDAGFPGNP
GAPGRPGIDGRPGPKGDFGPPGSLGAPGPQGPPGFGLPGLPGPAGPPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDQGRPGLTGPPGPPGPSGIPGNPGQDGLPGLPGQKGEMGVMGT
PGPSGNPGSPGVPGFPGPKGDNGQSGLPGTQGSQGLKGNKGDQGPRGPAGLSHPGSSEKG
TKGDPGSQGFSGTPGAKGIPGLPGDPGIPGQDGRPGPPGPPGPKGDPGFPGTSGLPGSLG
PKGSMGEMGLPGPSGIKGIPGQPGRPGQPGSPGTPGFPGQKGDPGTPGFGQPGAPGAKGE
PGSSGAPGATGPKGQQGPSGSPGLPGNPGPKGDPGLPGFQGAPGAIGPKGLDGVPGPPGL
AGSPGRPGTPGPSGLPGVPGDKGQAGRDGIPGSAGLKGEPGVPGYGIPGPSGIPGMPGQK
GDPGLPGQPGSPGYPGTKGDIGSPGATGSPGLQGPPGPRGLSIPGPKGIQGPPGPPGRVG
PPGPEGSRGPPGSGGVKGEKGYPGNPGSPGIPGQKGNTGPPGSMGPPGAPGSVGLKGDVG
LPGVTGYSGPKGHPGSPGGPGLPGDPGEPGHPGIPGNPGQAPAPIVVKGAQGLPGPPGPP
GSRGLPGEAGLEGRPGQPGSPGDPGPDGPPGFSGPPGGKGDSGPSGQPGQRGSPGSPGPD
GIPGPPGPPGLSSAAHGFLITRHSQTTDVPQCPPGTSVIYDGYSLLYVQGNERAHGQDLG
TAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIKPYISRC
TVCEAPAMVIAVHSQTIQLPLCPQFWETLWIGYSFMMHTSAGAEGSGQALASPGSCLEEF
RSSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRCVVCMKR
TLT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaagttaaagagtctgcagaagttcgcggtgcttctcttcatatctctgtcc
ataggggttcagcagtccgagtcggcggtatgtcatggttgtgggactggatcaaagtgt
gactgcactggagtgaaaggagtgaggggtgatagaggtttcccaggtcaatcaggtcat
ccaggtttaccaggatttcctggaccagaagggccaattggacctcgtggagagaagggt
gatgatggacctccaggaccatctggacctaaaggaataagaggacctcctggacttcct
ggatttgcagggacaccaggagttccaggtcttccaggattggatgggcctcctggtcca
aaaggaatcgcaggctgtaatggaacaaagggtgacagaggattaccaggaagtccaggt
ttccctggtatagacggtgcaccaggactacgtggtgaggctggactgaaggcaaaacct
ggtgaggtgatcatttcagaaacactgggaacatcaggaggcacaggaatcttgggtctg
ccaggacctaaaggagagccaggccggcccgggttgcaaggtcctagcggtcctcagggt
ccaagaggttacgatgggcctccaggtcctcctggtcctcaagggccaaagggaaatatg
ggtctgaacttccaagggccaaaaggagagaagggtgaaactggcttacaggggcctcct
gggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcttcgagga
gagaagggtgaccgtggacctcctggaccaaatggatatcctggctctcctggaccacct
ggcccatatggtggtccaaaaggagagaagggagagccaggagaatttggaaagaggggt
aaacctggtaaagatggggatcctgggcctcctggacttcagggtgtaccaggagaccct
ggtgtacctggacttccaggaggaattggagaaagaggggacaaaggtgagcgaggatta
cctggacctccaggcgtggtgtcaccctcaaccctgaaccaagtaggacctaaaggagat
cctgggctttcaggaaaccctggaaggaaaggagagccggggatatctggggtcccagga
ccaccaggtcagccaggtcgtgcaggaattggagtgcaaggtccacctggcccccctggt
tatccaggagagagaggacaaaagggcgatcaaggatctccgggagcttctcttccaggt
tctcctggcagacctggaccgcaaggttttcaaggacttccaggacctccaggacctcca
ggaatatccactggtggtgaaaactgtctcccaggacctactggtcttccaggcctgaat
ggggaccctggttatccaggggagacaggccagaaaggtgaaaagggggatacatgtgtg
aattgtttctcaagtggcaacctcattcctggaccgcagggcccacctggacctccagga
cccccaggcagtcctggattccctggttataaaggagacaggggatccccaggcggccct
ggttccatggggccaccaggtttaccaggattgcaaggtttatctggagcaccaggagag
aagggtgaccctggtgaagcagtttcatttgatggtatgaagggagacaagggagacaca
ggattccctggccctccaggtctgcctgggcgggatggagcacctggtcgagatggatct
cctggattgcctggtcccaagggtgcacctggttccttattgcttaaaggtgaacgtggc
ccggctggagagcctggcccttcaggttctcctggagacagggggcttcctggtccccct
ggatttggcccacagggacctcctggagagaaaggtttccagggcgtgtcaggaaggcaa
ggacctcctggacctccaggtcagaaaggtgaatcaggtctggctctctctcagaaagga
gaacctggacccagaggaactgatggagaaccaggtcgaccaggaaatccaggtgaccct
ggccaacctggttcccctggttttccaggattatctggccaaaaaggagaacctggtatc
ccaggcataggtttgccaggcccaccaggtcctaaaggattcccaggtattgctggaagt
ccaggcagccctggcagacctggacctccaggtgtggatggactacctggtgtatcagga
ccgcgtggtcctaagggcgaacctggttttggtattcctggaccccctgggcccccaggt
ttgcctggcagtaagggttttcaagggcctaaaggtgatgccggattccctggaaatcca
ggtgcacctggccgacctggtatagacggtcgtccaggccctaaaggtgattttggtcct
cctggttctttgggtgcacctggccctcaaggcccccctggttttggactacctggactg
cctggaccagcaggaccccctggacctatgggcaatcctggttctcctggtttgaatggt
gagaaaggagaccctggttccccaggacttgatattccaggcttgcctggtgaccagggt
agacccggattaactggacctcctggtcctcctggcccttctgggatccctggaaaccct
ggccaagatggactacctggattaccaggacaaaagggagaaatgggtgtgatgggtact
ccaggaccttctggtaatcctggcagcccaggtgttccaggatttcctggaccaaaaggt
gataatggtcagtcaggattgccaggaacccaaggaagtcaaggattaaagggaaataaa
ggtgaccaaggtccaagaggcccggctggtttaagccatcctggtagctcagaaaaagga
acgaaaggagacccaggatctcaaggatttagtggcactccaggagcaaaaggtattcct
ggccttccaggagacccaggtattcctggacaggatgggcgtcctgggccacctggaccc
ccaggtcccaagggagatcccggatttccaggaacatcaggtctccccggttctctaggg
ccaaagggtagcatgggcgagatgggattgcctggcccttctggaattaaaggaattcca
ggtcaacctgggcgccctggacagcctggctctccaggaacaccaggatttccaggacag
aaaggagaccctggaacaccaggatttgggcaaccaggagctccaggagccaagggtgaa
cctgggtcttctggtgctcctggagctacagggccaaaaggtcaacaagggccctcagga
agtccaggattgcctgggaatcctggtccaaagggtgatcctggcctcccaggattccaa
ggtgcacctggtgccattggccctaagggtctggatggagtcccaggcccccctggtcta
gcaggatcacctggaaggcccggaacccctggtccatctggtctgccaggtgtacccgga
gacaagggtcaagctggtcgtgatggtattcctggatcagcaggattgaaaggagagcca
ggtgtaccaggttatgggatcccaggtccttcaggtattcctgggatgccaggtcaaaaa
ggtgaccctggtctccctggtcagcctggcagccctggctaccctggaacaaagggcgat
ataggatcccctggtgcaacaggtagccctggtctccaagggccccctggtcctcggggt
ctgtcgattcccgggcctaaaggcatccagggtcctcctggcccaccaggaagagtaggt
cctcctggcccagagggtagccgaggaccaccaggttctggaggagtgaagggtgagaaa
ggctaccctggaaaccccggatcgcctggtatacctggacagaaaggaaataccggacca
ccaggttcgatgggccctcctggagctcctggaagtgtcgggcttaaaggagatgtcggt
cttccgggcgttacaggatattcaggacctaagggacatcctggtagtcctgggggtcct
ggcctacccggggatcctggtgaacctggtcatccaggtattcctggtaatccaggtcaa
gcgccggcccctattgtggtaaaaggtgcacagggtctccctggtcctccaggacctcca
ggatcccgagggctcccaggagaggcaggactggaggggcgtccaggtcagcctggtagt
cctggtgatccaggccctgatggacctccaggattcagtggtccacctggaggaaaagga
gattcgggaccatctggacagccgggtcaacggggttcacctggctcacctggtccagat
gggattccaggtcctccaggacctccaggtctgtcatcagcagctcatggcttcctgatt
acgcgtcacagtcagacgacagatgtgcctcaatgcccacctggcacctctgtcatctac
gatggctattctctgctttacgtacaaggcaatgagagggcgcatggccaggacctgggt
acggctggaagttgtctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaac
aacgtgtgcaacttcgcttcccgtaatgactactcctattggttgtctactcctgaaccc
atgcccatgagcatggctcctatccaaggagaaaacattaaaccctacatcagcagatgt
actgtatgtgaagccccagctatggtgatagcagtgcacagtcagaccatccaactgcca
ttatgtccacagttctgggagacactgtggatcggctattccttcatgatgcacactagt
gcaggtgctgagggctccggtcaggctttggcctcgcctggctcctgtctggaggagttt
cgctcatctcctttcatcgagtgccatggccgtggaacctgcaactactatggcaactct
tacagcttctggctggccacagtcgaacagtctgaaatgttcaggaagccacagtctgag
acgctgaaagcaggcaatctccagacccgcgtgagccgctgtgttgtgtgtatgaagaga
acgttaacatag
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integrated database retrieval system