KEGG   Tachysurus vachellii: 132848729
Entry
132848729         CDS       T09596                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc04510  Focal adhesion
tvc04512  ECM-receptor interaction
tvc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132848729 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132848729 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132848729 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tvc04147]
    132848729 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:tvc00536]
    132848729 (col4a5)
Exosome [BR:tvc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   132848729 (col4a5)
Glycosaminoglycan binding proteins [BR:tvc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   132848729 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 132848729
NCBI-ProteinID: XP_060730670
LinkDB
Position
7:17659584..17704512
AA seq 1683 aa
MNQKLKSLQKFAVLLFISLSIGVQQSESAVCHGCGTGSKCDCTGVKGVRGDRGFPGQSGH
PGLPGFPGPEGPIGPRGEKGDDGPPGPSGPKGIRGPPGLPGFAGTPGVPGLPGLDGPPGP
KGIAGCNGTKGDRGLPGSPGFPGIDGAPGLRGEAGLKAKPGEVIISETLGTSGGTGILGL
PGPKGEPGRPGLQGPSGPQGPRGYDGPPGPPGPQGPKGNMGLNFQGPKGEKGETGLQGPP
GPPGQVDQLIGETDGVILRGEKGDRGPPGPNGYPGSPGPPGPYGGPKGEKGEPGEFGKRG
KPGKDGDPGPPGLQGVPGDPGVPGLPGGIGERGDKGERGLPGPPGVVSPSTLNQVGPKGD
PGLSGNPGRKGEPGISGVPGPPGQPGRAGIGVQGPPGPPGYPGERGQKGDQGSPGASLPG
SPGRPGPQGFQGLPGPPGPPGISTGGENCLPGPTGLPGLNGDPGYPGETGQKGEKGDTCV
NCFSSGNLIPGPQGPPGPPGPPGSPGFPGYKGDRGSPGGPGSMGPPGLPGLQGLSGAPGE
KGDPGEAVSFDGMKGDKGDTGFPGPPGLPGRDGAPGRDGSPGLPGPKGAPGSLLLKGERG
PAGEPGPSGSPGDRGLPGPPGFGPQGPPGEKGFQGVSGRQGPPGPPGQKGESGLALSQKG
EPGPRGTDGEPGRPGNPGDPGQPGSPGFPGLSGQKGEPGIPGIGLPGPPGPKGFPGIAGS
PGSPGRPGPPGVDGLPGVSGPRGPKGEPGFGIPGPPGPPGLPGSKGFQGPKGDAGFPGNP
GAPGRPGIDGRPGPKGDFGPPGSLGAPGPQGPPGFGLPGLPGPAGPPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDQGRPGLTGPPGPPGPSGIPGNPGQDGLPGLPGQKGEMGVMGT
PGPSGNPGSPGVPGFPGPKGDNGQSGLPGTQGSQGLKGNKGDQGPRGPAGLSHPGSSEKG
TKGDPGSQGFSGTPGAKGIPGLPGDPGIPGQDGRPGPPGPPGPKGDPGFPGTSGLPGSLG
PKGSMGEMGLPGPSGIKGIPGQPGRPGQPGSPGTPGFPGQKGDPGTPGFGQPGAPGAKGE
PGSSGAPGATGPKGQQGPSGSPGLPGNPGPKGDPGLPGFQGAPGAIGPKGLDGVPGPPGL
AGSPGRPGTPGPSGLPGVPGDKGQAGRDGIPGSAGLKGEPGVPGYGIPGPSGIPGMPGQK
GDPGLPGQPGSPGYPGTKGDIGSPGATGSPGLQGPPGPRGLSIPGPKGIQGPPGPPGRVG
PPGPEGSRGPPGSGGVKGEKGYPGNPGSPGIPGQKGNTGPPGSMGPPGAPGSVGLKGDVG
LPGVTGYSGPKGHPGSPGGPGLPGDPGEPGHPGIPGNPGQAPAPIVVKGAQGLPGPPGPP
GSRGLPGEAGLEGRPGQPGSPGDPGPDGPPGFSGPPGGKGDSGPSGQPGQRGSPGSPGPD
GIPGPPGPPGLSSAAHGFLITRHSQTTDVPQCPPGTSVIYDGYSLLYVQGNERAHGQDLG
TAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIKPYISRC
TVCEAPAMVIAVHSQTIQLPLCPQFWETLWIGYSFMMHTSAGAEGSGQALASPGSCLEEF
RSSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRCVVCMKR
TLT
NT seq 5052 nt   +upstreamnt  +downstreamnt
atgaatcaaaagttaaagagtctgcagaagttcgcggtgcttctcttcatatctctgtcc
ataggggttcagcagtccgagtcggcggtatgtcatggttgtgggactggatcaaagtgt
gactgcactggagtgaaaggagtgaggggtgatagaggtttcccaggtcaatcaggtcat
ccaggtttaccaggatttcctggaccagaagggccaattggacctcgtggagagaagggt
gatgatggacctccaggaccatctggacctaaaggaataagaggacctcctggacttcct
ggatttgcagggacaccaggagttccaggtcttccaggattggatgggcctcctggtcca
aaaggaatcgcaggctgtaatggaacaaagggtgacagaggattaccaggaagtccaggt
ttccctggtatagacggtgcaccaggactacgtggtgaggctggactgaaggcaaaacct
ggtgaggtgatcatttcagaaacactgggaacatcaggaggcacaggaatcttgggtctg
ccaggacctaaaggagagccaggccggcccgggttgcaaggtcctagcggtcctcagggt
ccaagaggttacgatgggcctccaggtcctcctggtcctcaagggccaaagggaaatatg
ggtctgaacttccaagggccaaaaggagagaagggtgaaactggcttacaggggcctcct
gggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcttcgagga
gagaagggtgaccgtggacctcctggaccaaatggatatcctggctctcctggaccacct
ggcccatatggtggtccaaaaggagagaagggagagccaggagaatttggaaagaggggt
aaacctggtaaagatggggatcctgggcctcctggacttcagggtgtaccaggagaccct
ggtgtacctggacttccaggaggaattggagaaagaggggacaaaggtgagcgaggatta
cctggacctccaggcgtggtgtcaccctcaaccctgaaccaagtaggacctaaaggagat
cctgggctttcaggaaaccctggaaggaaaggagagccggggatatctggggtcccagga
ccaccaggtcagccaggtcgtgcaggaattggagtgcaaggtccacctggcccccctggt
tatccaggagagagaggacaaaagggcgatcaaggatctccgggagcttctcttccaggt
tctcctggcagacctggaccgcaaggttttcaaggacttccaggacctccaggacctcca
ggaatatccactggtggtgaaaactgtctcccaggacctactggtcttccaggcctgaat
ggggaccctggttatccaggggagacaggccagaaaggtgaaaagggggatacatgtgtg
aattgtttctcaagtggcaacctcattcctggaccgcagggcccacctggacctccagga
cccccaggcagtcctggattccctggttataaaggagacaggggatccccaggcggccct
ggttccatggggccaccaggtttaccaggattgcaaggtttatctggagcaccaggagag
aagggtgaccctggtgaagcagtttcatttgatggtatgaagggagacaagggagacaca
ggattccctggccctccaggtctgcctgggcgggatggagcacctggtcgagatggatct
cctggattgcctggtcccaagggtgcacctggttccttattgcttaaaggtgaacgtggc
ccggctggagagcctggcccttcaggttctcctggagacagggggcttcctggtccccct
ggatttggcccacagggacctcctggagagaaaggtttccagggcgtgtcaggaaggcaa
ggacctcctggacctccaggtcagaaaggtgaatcaggtctggctctctctcagaaagga
gaacctggacccagaggaactgatggagaaccaggtcgaccaggaaatccaggtgaccct
ggccaacctggttcccctggttttccaggattatctggccaaaaaggagaacctggtatc
ccaggcataggtttgccaggcccaccaggtcctaaaggattcccaggtattgctggaagt
ccaggcagccctggcagacctggacctccaggtgtggatggactacctggtgtatcagga
ccgcgtggtcctaagggcgaacctggttttggtattcctggaccccctgggcccccaggt
ttgcctggcagtaagggttttcaagggcctaaaggtgatgccggattccctggaaatcca
ggtgcacctggccgacctggtatagacggtcgtccaggccctaaaggtgattttggtcct
cctggttctttgggtgcacctggccctcaaggcccccctggttttggactacctggactg
cctggaccagcaggaccccctggacctatgggcaatcctggttctcctggtttgaatggt
gagaaaggagaccctggttccccaggacttgatattccaggcttgcctggtgaccagggt
agacccggattaactggacctcctggtcctcctggcccttctgggatccctggaaaccct
ggccaagatggactacctggattaccaggacaaaagggagaaatgggtgtgatgggtact
ccaggaccttctggtaatcctggcagcccaggtgttccaggatttcctggaccaaaaggt
gataatggtcagtcaggattgccaggaacccaaggaagtcaaggattaaagggaaataaa
ggtgaccaaggtccaagaggcccggctggtttaagccatcctggtagctcagaaaaagga
acgaaaggagacccaggatctcaaggatttagtggcactccaggagcaaaaggtattcct
ggccttccaggagacccaggtattcctggacaggatgggcgtcctgggccacctggaccc
ccaggtcccaagggagatcccggatttccaggaacatcaggtctccccggttctctaggg
ccaaagggtagcatgggcgagatgggattgcctggcccttctggaattaaaggaattcca
ggtcaacctgggcgccctggacagcctggctctccaggaacaccaggatttccaggacag
aaaggagaccctggaacaccaggatttgggcaaccaggagctccaggagccaagggtgaa
cctgggtcttctggtgctcctggagctacagggccaaaaggtcaacaagggccctcagga
agtccaggattgcctgggaatcctggtccaaagggtgatcctggcctcccaggattccaa
ggtgcacctggtgccattggccctaagggtctggatggagtcccaggcccccctggtcta
gcaggatcacctggaaggcccggaacccctggtccatctggtctgccaggtgtacccgga
gacaagggtcaagctggtcgtgatggtattcctggatcagcaggattgaaaggagagcca
ggtgtaccaggttatgggatcccaggtccttcaggtattcctgggatgccaggtcaaaaa
ggtgaccctggtctccctggtcagcctggcagccctggctaccctggaacaaagggcgat
ataggatcccctggtgcaacaggtagccctggtctccaagggccccctggtcctcggggt
ctgtcgattcccgggcctaaaggcatccagggtcctcctggcccaccaggaagagtaggt
cctcctggcccagagggtagccgaggaccaccaggttctggaggagtgaagggtgagaaa
ggctaccctggaaaccccggatcgcctggtatacctggacagaaaggaaataccggacca
ccaggttcgatgggccctcctggagctcctggaagtgtcgggcttaaaggagatgtcggt
cttccgggcgttacaggatattcaggacctaagggacatcctggtagtcctgggggtcct
ggcctacccggggatcctggtgaacctggtcatccaggtattcctggtaatccaggtcaa
gcgccggcccctattgtggtaaaaggtgcacagggtctccctggtcctccaggacctcca
ggatcccgagggctcccaggagaggcaggactggaggggcgtccaggtcagcctggtagt
cctggtgatccaggccctgatggacctccaggattcagtggtccacctggaggaaaagga
gattcgggaccatctggacagccgggtcaacggggttcacctggctcacctggtccagat
gggattccaggtcctccaggacctccaggtctgtcatcagcagctcatggcttcctgatt
acgcgtcacagtcagacgacagatgtgcctcaatgcccacctggcacctctgtcatctac
gatggctattctctgctttacgtacaaggcaatgagagggcgcatggccaggacctgggt
acggctggaagttgtctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaac
aacgtgtgcaacttcgcttcccgtaatgactactcctattggttgtctactcctgaaccc
atgcccatgagcatggctcctatccaaggagaaaacattaaaccctacatcagcagatgt
actgtatgtgaagccccagctatggtgatagcagtgcacagtcagaccatccaactgcca
ttatgtccacagttctgggagacactgtggatcggctattccttcatgatgcacactagt
gcaggtgctgagggctccggtcaggctttggcctcgcctggctcctgtctggaggagttt
cgctcatctcctttcatcgagtgccatggccgtggaacctgcaactactatggcaactct
tacagcttctggctggccacagtcgaacagtctgaaatgttcaggaagccacagtctgag
acgctgaaagcaggcaatctccagacccgcgtgagccgctgtgttgtgtgtatgaagaga
acgttaacatag

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