Tachysurus vachellii: 132849274
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Entry
132849274 CDS
T09596
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03013
Nucleocytoplasmic transport
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132849274 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
132849274 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132849274 (thoc1)
03041 Spliceosome [BR:
tvc03041
]
132849274 (thoc1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132849274 (thoc1)
Spliceosome [BR:
tvc03041
]
Complex C
Other components
EJC/TREX
132849274 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132849274 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
132849274
NCBI-ProteinID:
XP_060731510
LinkDB
All DBs
Position
7:complement(29815697..29825754)
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AA seq
662 aa
AA seq
DB search
MNFVFVLTALQHTLLAESRHFTLLKHRPEVENMQPEVKQSRRFIVLRKGRWRLLCVSVCV
CVCLSVCVCLSVSVCVCVSVCVCVCLCLCVCLCVCVCLCLCVCLSVSVSVCVCVCVCVCV
CVCVCVCLCLCVCLSVSVCVSVCVCVCVPTTDLLRRLSKSQNTVFCGRIQLFLARLFPLS
EKSGLNLQSQFNLENITVFNKNEQESTLGQQSSDVKEDGMEEGEMGEEDTPAPCSIPIDY
NLYRKFWMLQDYFRNPVQCYDKFSWITFVKYSDETLAVFKSFKLDDTQASRRKREEMHTA
GGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLIHFQYLKGQVKFKSSNCVLSDDQTS
WMEETTKLVYQLLRETPPDGEMFAAMVEHILNTEENWNAWKNEGCPSFVKERPTETKPQR
PSRKRAAPEDFLGKGPERKILMGNDELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAI
EQADPANMVEDQYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLEDYLENMVIKLAK
ELPKDLPSEEIKTGEEEDESGDNLLKESNDSPSIQSKLVTNSQMDEIAKKLGAQWKSLAP
HLDVKEVEIREIEADSDDVELQAKMMLVSWQDREDAQATMESLVTALNTAGFASIAQGFS
ET
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgtgtttgttctcacggctctacagcacactctgctggccgaaagccgccat
tttactttgctgaagcataggccggaagtggaaaatatgcagccggaagtaaaacagtca
aggcgctttatcgtgttgaggaaaggaagatggcgcctgctgtgtgtgtctgtctgtgtg
tgtgtgtgtctgtctgtgtgtgtgtgtctgtctgtgtctgtgtgtgtgtgtgtgtctgtc
tgtgtgtgtgtctgtttgtgtctgtgtgtgtgtctgtgtgtgtgtgtctgtttgtgtctg
tgtgtgtgtctgtctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgtg
tgtgtctgtgtgtgtgtctgtttgtgtctgtgtgtgtgtctgtctgtgtctgtgtgtgtg
tctgtttgtgtctgtgtgtgtgtccccacaacagatctccttcgcagactgtccaaatcc
cagaatacggtgttctgtgggaggatccagcttttcctcgctcgtctgttccctctgtct
gagaaatcaggtctgaatcttcagagtcagtttaacctggagaacatcacagtgtttaac
aagaacgaacaggagagcacactcggacagcagagctctgatgttaaagaggacggaatg
gaagaaggagaaatgggtgaagaagacacacctgctccatgctccattccaatagactac
aacttgtacaggaagttctggatgctgcaggattacttcaggaacccggtgcagtgctac
gacaagttctcctggatcaccttcgtgaagtactcggacgagacgttggcggtgtttaag
agcttcaagctggacgacactcaggcctccaggaggaagcgggaggagatgcatacagct
ggaggcgaacatgtttatttcgcaaagttcctgaccagtgagaagctaatggatctgcag
cttagtgatagtaacttcagacgtcacatcctgctgcagtacctcatccacttccagtac
ctcaaaggtcaggtcaagttcaaaagctccaattgtgtccttagtgatgatcagacgtcc
tggatggaggagactacaaagcttgtatatcagttactcagagaaactcctccagacggt
gagatgtttgctgctatggtggagcacattctaaacacagaggaaaactggaacgcctgg
aagaacgagggatgtccaagttttgtcaaagaaagacccacagagaccaaaccacagcga
cccagcaggaaacgagcagcacccgaggacttcctgggtaaaggaccagagcgtaagatc
ctgatgggcaatgatgaactgacacgactgtggaacctcaatcctgacaacatggaggcg
tgcaaatccgacagcagggagtttatgccgtccctggaggacttttttgaggaggccatc
gagcaggcagacccagccaacatggtggaggatcagtacaaggtggtgaggaactcaaat
tacggctggcgagctctccgtcttctctcacgccgcagtccacacttcttccagcccaca
aatcagcagttcaagagtctggaggattatctagagaacatggtgatcaaactggccaag
gaacttcctaaggatctcccgtctgaggagataaagactggagaggaggaggacgagagc
ggagacaatctgctgaaggagagcaatgacagtccgagtattcagagcaaactggtgact
aacagtcagatggacgaaatcgccaagaagctcggggctcagtggaagtcgctcgcgcct
cacctggatgtgaaggaggtggagattcgcgagatcgaagcagacagtgacgacgttgag
cttcaggccaaaatgatgctggtgtcctggcaggaccgggaggatgcccaggccaccatg
gagagcctggtcacggcactgaacaccgctggcttcgctagcatcgcacagggcttcagt
gaaacatga
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