Tachysurus vachellii: 132856089
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Entry
132856089 CDS
T09596
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
tvc
Tachysurus vachellii
Pathway
tvc03013
Nucleocytoplasmic transport
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132856089 (upf3b)
03015 mRNA surveillance pathway
132856089 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132856089 (upf3b)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132856089 (upf3b)
mRNA cycle factors
P-body specific factors
132856089 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
132856089
NCBI-ProteinID:
XP_060741479
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Position
13:complement(13452394..13458439)
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AA seq
455 aa
AA seq
DB search
MKEDKENTRPKERKVEIKCEENERTERPNKEKKEAMTKIVIRRLPPSLTKEELEEQLQPL
PEVDYLEFFSSDTSLYPHLFARAYLNFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRNKKRDSKSGTIEEDTDYKRFLEIYNGDEEKFTSTTETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRLREEKKEERRRRELERKRVRDEERRKWREEDRRKRKEAEKLKKAE
KAPEKDKDQAKEEQPKIKLLKKLEKQENTDNEKPKEKPKKPEREKVKDDRAPGGANEKKR
QNGEHREDKPRKYEEDGRREHRDREVDRERDRDRERRQKERERIKRQDEERRKRREHHDG
ENVYRKRDREDENKKEKEYVWEKRKNENTGESTPSDKSSKDAKKEENLKKDRLRNKDRPA
IQLYQPGARSRHRGSEAGEKKADRDAKNIHEKGEE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaatacgcgacccaaagagaggaaagtggagatcaaatgtgaa
gaaaatgaaagaacggagaggccaaataaagagaagaaggaggccatgacaaagattgtg
atccgccgcctccctccaagtctaactaaagaagagctggaggagcagctacagcctctg
cccgaggtggattatctcgagttcttctccagtgacaccagtctctaccctcatctcttt
gcaagagcatatctaaatttcaagaaccaggaggacattgtacttttcagagaccgtttt
gatggttatgtgttcattgataatcgaggacaagaatatcctgcaattgttgaatttgca
ccattccagaagattgctaaaaagaggaataagaaaagagattccaaaagtggaacaatt
gaagaagatactgattataagaggtttttggagatctacaatggtgatgaggagaagttt
acgtcaacaactgagacattattagaagaaatagaggctaagacgaaggagctagttgcc
aagaaaacaactcctctcttggacttccttaagaataagcagagattaagagaggaaaaa
aaagaggagaggaggaggagggagctggagcgcaaacgcgtgcgggatgaagagcggcgg
aagtggagagaagaggacagaaggaagcgcaaagaagctgagaaattaaagaaagcagaa
aaggcacctgaaaaggacaaggaccaagctaaggaggagcagccaaaaatcaagctcctg
aagaaactagagaagcaagagaatactgacaacgaaaagcccaaagagaaacccaagaag
ccggagcgggagaaagtgaaggatgaccgagctccaggaggagcaaatgaaaagaaacgt
caaaatggcgaacacagagaggacaagccaagaaaatatgaggaagatggacgcagggag
catcgggatcgtgaagtcgacagagaaagagatcgggatcgagagcgacggcagaaagag
agagagagaatcaagaggcaggacgaggaacggcggaagaggagggagcatcacgatgga
gaaaacgtctacagaaagagagacagagaggacgagaacaaaaaggaaaaggagtatgta
tgggaaaagagaaagaacgagaatacgggcgaatccactccatctgacaaatcttctaaa
gatgctaaaaaggaagaaaatctgaaaaaggatcgtttaaggaacaaggatcgccctgcc
atccagctgtaccagccaggagcaaggagccgccacagaggatcagaggctggcgagaag
aaggctgatagggatgccaaaaatatacacgagaaaggggaagagtga
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