Tachysurus vachellii: 132860441
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Entry
132860441 CDS
T09596
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132860441 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132860441 (ddx46)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132860441 (ddx46)
Spliceosome [BR:
tvc03041
]
Complex A
U2 snRNP components
U2 related factors
132860441 (ddx46)
Complex B
132860441 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
132860441
NCBI-ProteinID:
XP_060747622
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All DBs
Position
17:13320225..13332440
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AA seq
1031 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPDSKRVKKEERTRERGRRERSRSRERRRSRSRDR
KRPRRSRSRERKRSRSRDRSRRSRSRSKGRSKEKLDGGEQSADKKKKEEKEEERVEDQDF
DQTTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEEGL
ASMDQEGDEDEDKEKEGKVEEAELNEEEGGEELDPLDAYMEEVKEEVKKFNMGTMKGGND
KKGGMTVTKVVTVVKTKKTPHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQR
KILEPVDHQKIQYEAYRKNFYVEVPELARMTPEEVNEYRLELEGIIVKGKGCPKPIKTWV
QCGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIL
DQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRG
AEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQ
TVMFSATFPRVMEALARRILNKPVEVQVGGRSVVCSDVEQHVIVIEEAKKFLKLLEILGH
YQEKGTVIIFVDKQEHADSLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVA
TSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGEII
KALELSGSSVPSELEQLWATFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQ
KAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLAAPGGAAPSASGLTVTATGLGGLAV
PSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAIMRGGTMIAPSISAKTIAEQL
AEKINAKLNYTPIEKLEEERQSAEQSESVKRYEEELEINDFPQTARWKVTSKEALQRIGE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTAKGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtctcgacattaccggaagcgctcatcatcacgaggacgttcgggcagt
cgctcgaaaagccgctctcctgattctaagcgtgtgaagaaagaggagcgcacacgtgaa
cggggccgtagagagcgatcacggagcagggaaaggaggagatcacgctccagagaccgc
aagagaccaaggcgatctcgcagtcgagagcgtaaacgctccagaagtcgtgatcggtcg
aggagatcgaggagtcgcagcaagggacgaagcaaggagaagttggatggcggtgagcag
tcagcagataagaagaagaaagaagagaaggaggaggagcgagtggaggatcaggacttt
gatcagacgacactggaggaggagatgaggaagaggaaggagcgggtggagaaatggagg
gaagagcaaaggaagaaggccatggagaacattggcgagatcaagaaggaactggaagag
atgaaacaggggaagaaatggagcttggaggatgatgatgatgatgatgaagagggtcta
gcatcaatggatcaagagggggatgaggacgaggataaggagaaggagggaaaggttgag
gaagcggaactgaatgaggaagagggaggggaagaacttgatcccctggatgcctacatg
gaagaagtgaaggaggaagtgaaaaagttcaacatgggcaccatgaagggtggaaatgac
aaaaaaggaggcatgactgtgacaaaagtggtgacggtggtgaagacgaagaagacacct
cacaccaccaaaaagaaaggagagttaatggagaacgatcaggatgccatggagtattcc
tcagaggaggaggaagtggacctgcagacagctctcactggcttccagaccaaacagcgt
aaaattctggagcctgtagatcatcagaaaattcagtacgaagcataccgcaagaacttc
tacgtggaagttcctgaactggccagaatgacaccagaagaggtaaatgagtatcgtctg
gagcttgaaggaatcattgtcaaggggaaaggctgtcccaaacccattaagacctgggtg
cagtgtggaacctccatgaaggtcttaaatgcccttaaaaagcataactacgagaagcct
acgcccatccaggctcaggccattccagccatcatgtcaggacgtgacctcattggcatt
gccaaaacaggaagtgggaagaccattgcattcctgcttcccatgtttcgccatatttta
gaccagcgacccctagaggagggagagggaccgattgcggtgatcatgacaccgacacgt
gagctcgctctgcaaatcactaaagagtgtaaaaagttctccaagccactgggtctcaga
gtggtgtgtgtgtacgggggaacaggcatcagcgagcagatagcagagctgaaacgtgga
gctgaaatcatagtgtgcactcctggacgaatgattgacatgttgggagccaacagtgga
cgagtcacgaacctgcgcagagtcacgtatgtcgtagtagatgaagctgatcgaatgttt
gacatgggcttcgaaccgcaggtaatgcgcataatggacaacgtgcggccggatcgtcag
acggtgatgttttcagcaacattcccccgagtgatggaggctttagctcgccgcatcctc
aacaaaccagttgaggttcaggttggtgggaggagcgtggtgtgttcagatgtggagcag
catgtgattgtgattgaggaggcgaagaagttcctgaagctgttggagattttaggccat
tatcaggagaaaggcacagtgattatttttgtagataaacaggaacatgctgacagcttg
ttgaaagacctgatgaaggcctcgtacccctgcatgtctctgcatggaggaattgaccag
tacgatcgtgatagcattataaatgattttaagagcggtgcgtgtcggctgatggtggcc
acatcggtagcagcaagaggccttgatgtaaagcacctcattttggtggtgaactacaac
tgtcctaatcattatgaggactatgttcaccgtgccgggaggaccggaagagctggaaat
aagggctttgcttatacatttatcacagaggatcaggcacgctatgcaggtgaaatcatt
aaagctctagagttgtcagggtcttcagttccttctgagcttgagcagctttgggctaca
tttaaggagcagcagaaagcggaggggaagagtattaagagcagcagtggattttcaggg
aaaggctttaaatttgatgagactgagcatgctttggcgaacgagaggaagaaactacag
aaagcggcgcttggtcttcacgactccgatgatgaagacacagcactggatatagatgag
cagattgaaagcatgtttaactctaagaagcgtgttaaggatctggcggctccagggggt
gccgcaccgtctgcttcaggtctcaccgttactgcgacaggactcggtggtcttgctgta
ccttcagctggaaacattcagaaacttgagattgccaagaaattggcactgaagatcaat
gcacagaaaaaccttggtgcagaagctcaggatgtaatgcagcaggctactaatgccatc
atgaggggtggcacaatgatcgccccctctatctctgctaagaccattgctgagcagctt
gctgagaaaattaatgccaagctgaactacactcccattgagaaactggaggaggagcga
cagagtgctgaacagtcagagagtgtcaagaggtatgaagaggagctggagatcaacgac
tttccccagacggcgaggtggaaggtgacgtctaaagaggcactgcagaggattggtgaa
tattcagaggctgcgatcaccattaggggtacatacttccctcctggcaaagaacccaaa
gagggagaacgcaagatttatcttgccatcgagagtgcaaatgagttggcggtgcagaaa
gcaaaggcagagatcacacggctcatcaaagaagagctcatacgtttgcaaaactcatac
caaccgacagccaaaggccgatacaaagtgctgtag
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