Trametes versicolor: TRAVEDRAFT_64949
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Entry
TRAVEDRAFT_64949 CDS
T04795
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tvs
Trametes versicolor
Pathway
tvs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRAVEDRAFT_64949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvs03400
]
TRAVEDRAFT_64949
Enzymes [BR:
tvs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRAVEDRAFT_64949
DNA repair and recombination proteins [BR:
tvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRAVEDRAFT_64949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
19418627
NCBI-ProteinID:
XP_008038813
JGI:
64949
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MQPTPAPSSPPASQLQVPASQLLPPAVAAEDHPIEYPAPPQNKGSAPFQVLVALFEKLQN
ERKPEKRRRLIASWFNGWRKDIGYDLFPVLRLILPQKDRERTVYGLKEKNLAKAYIKLIP
LDRHGPDAIRLLNWKKPTERYRSAGDFPSVLWEVVNKRNNVTEGSLTIDDINGVLDELAQ
NMGKSDLQSKILQRVYNRATSDEQRWLVRIILKDMIISVKENTVFGVFHPDAHDLFNTCS
DLKKVTWELWDPERRLNDEDKAVQLFRAFAPMLCKRPTKKIEDSVKEMQGRAFIIEEKLD
GERIQLHKRGNEYFYCSRKGKDYTYLYGKHVGTGSLTPYIDSAFDPRIDEIILDGEMLVW
DPVSERNLPFGTLKTAAIDRSKKEFNPRPCFKVFDLLYLNGTSLLHKSLKFRKRNLRSCV
IPVAGRIELVTEFEGRTAKDVRTRMDDIIGNRGEGLVMKHPDSEYVLNGRNKDWIKVKPE
YMDNMGETVDVLVVVLTFIAAGNYGSGRRSGGVSTLICAVLDDRRVHNDDDEPKYSTFVR
IGSGLSYADYIWIRQKPWKPWGRDAPSYLQVARKGHDDKGDVYLEPQDSFIVKVKAAEIT
STDMYHLGFTMRFPRALQIRDDLSIADCMTASAVLEGIRSEKKRKMEDDTDKPKKKQNRT
AKKPTMMPEYRGVNLKDVEVEDNLFGDFKFVVSSDPKSRTGADDKKALLQMIHAHGGKYA
QVARNDPNILIVYGGQTTPYDLRLIMDKGVCDIIRPQWILDCVAYEKIVPLTKKYFFHAT
AARKETDEYAEDDSDTEEEPEDEPPSPSPSASRKSKSPPQEEPSQPKEEIKIDPSMAEWF
DVGASLQQSGGSKGGYISGSDTEEDPESDNEDVDPEAASEDEDWEKVDQDSGKSQEESKG
KASEARMGEDDNAMAYDEERIFKHLCLYLDSPSNARKHGMKVDTKREADIEKRFSEMSNV
ITENGGRVVDLDDPKLTHVILDKRDISRRKVLIARTSEPKRRHLVISDWVDACVAEETLL
DEEEFNP
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgacaccagcgccgtcttcgccgcccgcgtcccagcttcaagttcccgcgtcg
caacttctcccaccagcggtggcggcagaagaccatcccatcgagtaccctgctccccct
cagaacaagggaagcgctccatttcaagtccttgtggccctgttcgagaagcttcagaat
gaaagaaagcctgagaagcgtcgaagactgatcgcttcttggtttaacggctggaggaaa
gacatcggatacgacttgttccctgttttgcgattaatcctcccccaaaaagaccgagag
cgcaccgtgtatggcctcaaagagaagaacctcgcgaaggcatacattaagctcattccg
cttgaccgtcacggaccagacgctattagactcctcaactggaagaaacccaccgaacga
taccgctcggcgggtgatttcccttcggtactatgggaggttgtcaataagcggaacaat
gttacggagggatcgttgaccatcgacgacataaacggcgtcctagacgagcttgcccaa
aacatgggcaaatccgatttgcagtccaagattctacagcgagtctacaatagagccact
tcggatgagcagcgatggcttgttcgcatcatcttgaaagacatgattatctccgtgaag
gagaacactgttttcggcgttttccatcctgatgcacacgatctcttcaacacctgttcc
gacctcaaaaaggtcacctgggagctctgggatccagagcggagacttaacgacgaggac
aaagccgttcagctattccgtgcctttgcgcccatgctctgcaaaaggccgactaagaag
atcgaagattctgtcaaggaaatgcagggtcgtgcattcatcatcgaagagaagctcgac
ggtgaacgtatccagctgcataagcgtggaaatgaatacttctactgctctaggaaagga
aaggactacacatatttgtacggaaagcatgtcggaacgggaagcttgacgccctacatc
gactctgcgttcgatccgcgcatcgacgagattattctcgacggcgagatgctggtatgg
gatccggtctccgaacgcaatcttcccttcggcacgctcaagaccgctgctatcgaccga
tctaagaaggagttcaacccgcgcccatgcttcaaggtgttcgacctgctttacctgaac
ggcacatcgctcctgcacaagtctctcaaattccgcaagcgcaatctccgttcctgtgta
atcccagtagcaggacgcatcgagctggtcaccgaattcgaaggacgcactgccaaagat
gtccgaactcgtatggacgacatcataggaaaccgtggagagggattggtcatgaagcat
ccggactctgagtacgtgctgaacggccgcaacaaggactggatcaaggttaaaccggag
tacatggacaacatgggagagacggtcgatgtgcttgtggtcgtcctcacgttcattgca
gctgggaactacggttctggaaggcgttctggaggcgtttccacgctcatttgcgccgta
ctggacgaccgccgcgttcataacgacgatgacgagccaaagtacagcacctttgtccgt
atcggaagcggcctttcgtacgccgactacatttggatccgccaaaagccatggaagcct
tggggacgggacgcccctagttatcttcaagtcgcaagaaaggggcacgacgataaaggc
gacgtttatctcgagccacaggactcgttcatcgtaaaggtcaaggcggcggaaatcacg
agcacggatatgtatcacttgggctttaccatgcggttcccgcgggcactgcagattcga
gacgacctgtcgatcgctgattgtatgacggcctcggcggtcctcgaaggcatccggtct
gagaagaagaggaagatggaggatgataccgataaacccaagaagaagcagaatcgaacc
gcgaagaagccgaccatgatgcccgagtaccgcggcgtcaacctcaaggacgttgaggtc
gaggacaacctcttcggagacttcaagttcgttgtatcttctgaccctaagtcgagaacc
ggcgcggatgacaagaaggcgctgttgcagatgatccatgcacatggcggaaagtacgca
caggttgcccggaacgacccgaacatcctcatcgtctacggcggtcagacaactccatat
gatctcagactcattatggacaagggcgtgtgcgacattatacgcccgcaatggatattg
gactgcgtcgcgtatgagaagatagtaccactcaccaagaagtacttcttccacgccacc
gcagcacgcaaggagacggatgagtatgccgaggacgatagcgacaccgaagaagagccc
gaagatgagccaccctcaccttcgccgtctgcctcacggaagagcaagtctcctccacag
gaggagccttctcagccaaaggaggaaatcaagatagacccatcaatggcggaatggttc
gacgtcggggcgagtctgcagcagagtggtggctcgaaaggcgggtacatatccggcagt
gacacggaggaagacccggagtcggataatgaagacgtcgacccggaagctgcctctgag
gacgaggactgggagaaggtcgatcaggattccggcaagtcgcaagaggagagcaagggg
aaggcttccgaggcgcgcatgggcgaagacgacaacgctatggcctacgacgaagagcgt
atcttcaaacacctgtgcctatacctcgactcgccaagcaacgctcggaagcatggaatg
aaagtcgacactaagagggaggcggacatcgagaaacgtttctcggagatgtcgaatgtg
atcacagagaacggcggccgcgttgtcgacctcgacgatcccaagctgacgcacgtcatc
ctcgacaagcgggatatcagtcggcgcaaggtactcattgcacgcacgtccgagccgaag
cgtagacacctggtgatatcggactgggtcgacgcctgcgtggcagaagagaccttgctg
gatgaggaggagttcaacccgtag
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