Thermoactinomyces vulgaris: AB849_011640
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Entry
AB849_011640 CDS
T05864
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB849_011640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvu03400
]
AB849_011640
Enzymes [BR:
tvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB849_011640
DNA repair and recombination proteins [BR:
tvu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB849_011640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QBK14195
LinkDB
All DBs
Position
complement(2285095..2285997)
Genome browser
AA seq
300 aa
AA seq
DB search
MAEKERYVQVDGRELKITNPDKIWFPEAGIKKWDFILYCARLASYLLPYCKDRLLTTIRF
PDGVNHDSFYQKNAPFYRPDWVETSKAGDIEYILLNNVPTLIWLANLACLEYHVSFHRVD
RPVPTELVFDLDPSAPGFEKVAEVAWLIKEVLEKMGLSGVVKTSGATGLQIYVPIEPVYS
YEETRKIGELIAHYLTELHPRLVTVERQVKKRGDKVYIDYLQHWHNKTLIAPYSPRAVSE
ATVSTPLEWEELQTLRSPKEWTLLNIFDRLKEKGDLFEPVLSGERQRLDAILQFIEKRKL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaagagcgatacgtccaagttgacggacgggaattaaagatcaccaatccg
gataaaatctggtttcccgaagcagggatcaaaaagtgggattttattttgtattgcgcc
cgtctggcatcctatctcctgccttattgcaaggatcgtttgctgacaacgatccgtttt
ccggacggggtgaatcatgattcgttttatcagaaaaacgcgcctttttaccgcccggat
tgggtagagaccagcaaggcaggggatattgaatatattttgctcaataatgtcccgaca
ttgatttggctggcaaacctggcttgtctggaataccatgtttcttttcaccgggtggat
cgcccggttcccaccgagttggtgtttgacctggatcccagtgctcccggatttgaaaaa
gtggcggaagtggcgtggttgatcaaggaagtgctggagaaaatggggttatccggagtg
gtgaaaacctccggcgcaacgggacttcaaatttatgtcccgatcgaaccggtttactct
tatgaagaaacaaggaaaatcggggaattgatcgcacattatttgaccgaacttcatccc
cggttggtcacggtggaacgccaggtcaaaaagcggggagacaaagtttatattgattat
ctgcagcattggcacaacaaaacgttaattgcgccctattcgccgcgggccgtgtcggaa
gcaacggtttcgacgccgctggagtgggaggaactccaaacacttcgttcgcccaaggaa
tggacgctgctcaacatttttgaccgtttgaaagaaaaaggggatttgtttgaaccggtt
ttatccggtgaaagacaacgattggatgcgattcttcagtttattgaaaaacgcaaactg
taa
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