Tripterygium wilfordii (thunder duke vine): 119987045
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Entry
119987045 CDS
T07256
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119987045
03015 mRNA surveillance pathway
119987045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119987045
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119987045
5.6.2.5 RNA 5'-3' helicase
119987045
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119987045
mRNA cycle factors
Common to processing body (P body) and stress granule
119987045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
nSTAND3
ATPase
AAA_32
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
119987045
NCBI-ProteinID:
XP_038687689
LinkDB
All DBs
Position
20:complement(265770..279062)
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AA seq
1270 aa
AA seq
DB search
MDSQQSNLYETASQPDTGTDAYTFLEFNTQGESDFDYPELTWPTPSDSLAALSLEHTSDH
RGGTSLSSDHHSESTVVSPVSASTAKGGGRGGGAGGNSSGAMEALGAGMSGLNFEETGDD
DGYEFGKGEFTEHACKYCGVSNPACVVRCNVSSCRKWFCNSRGNTSGSHIVNHLVRAKHK
EVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDL
SQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVD
DEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFV
FPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNH
GLSVDFVWKSTSFDRMQTAMKTFAVDDTSVSGYIYHHLLGHEVEIQLVRNTLPRRFGAPG
LPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV
DQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQG
ELSSSDEKKYKALKRATEREITQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQSTEPE
CLIPLVLGAKQIILVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLGVKPIRLQVQYRMH
PSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL
NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS
VDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKPLLW
NGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLLFLGGPGIVPNDNFGSSASS
TPNADRRSSRARGSYMPPGPPNGTHKPGVHPAGFPMPRVPIPPFHGGPHSQPYAIPARGA
VHGPVGAVPHVPPPGSRGFGAGRGSAGAPIGSHLPHHQGTQQTVGNIGTNFNFPALENPN
SQPSVGGPLSQPGYVNNMPVQGQSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADFS
TQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLYTQV
GFNNDPSQDDSSQNHFGVANPNSLQSQGLMSSLYSQPFAHYNTQPLNLQAPQQQPQQGQG
SLNQNVHYNG
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggattcacagcagagtaacctttatgagactgcgtcgcagcccgacacaggcaccgat
gcctacactttccttgaattcaatacacagggcgaatctgacttcgattaccccgaattg
acctggccgacgccctctgattctctcgccgccttgtctctagagcacacctctgaccac
cgcgggggcacatcattatcgtccgatcaccactctgagtccactgttgtgtctcctgtg
tcggcgtccactgcgaagggtggcgggcgcggtggaggagcaggcgggaacagtagtggt
gcaatggaggctctaggagctgggatgagtgggttgaattttgaggagactggggatgac
gacgggtatgagttcggaaagggggaattcaccgagcatgcctgtaagtattgtggggtg
tcgaaccctgcctgtgtggtacggtgtaacgtttcctcttgccgcaaatggttctgcaat
tcaagagggaacacttctggctcgcatattgtgaatcacctagtccgagcaaagcacaag
gaagtttgtctccacaaagacagtcctttgggagaaactattcttgaatgctacaattgc
ggatgtcggaatgttttcctccttggatttatttcagccaagacagagagtgttgttgtt
cttctctgtagagaaccttgcttgagtgtgaatgcgttgaaggatatgaattgggacctg
agtcagtggtgtcccctgattgatgatagatgttttctgcagtggcttgtaaagatccca
tctgaacaggaacagttgagggcacgccaaattagtgcccaacaaattaacaaggtagaa
gagctctggaagacaaatcctgatgctaccctcgaagaccttgagaagcccggggtggat
gatgagccccaacccgtagtcttaaagtatgaagatgcatatcagtatcaaaatgtattt
gcaccacttattaagcttgaagctgactatgataaaatgatgaaagaatctcagagtaag
gacaatgtcacagttcgatgggatatcggtcttaacaaaaagcgtattgcatactttgtt
tttccgaaggaggacaatgagttgcgccttgttcctggtgatgagctgcggctgcgttac
tctggagatgcagctcatccagcttggcagtctgttggacatgtgatcaagctcactgca
caagaggaagtagcacttgagcttcgtgctaatcagggagttcctgttgatgtgaaccat
ggtttgagtgttgattttgtatggaagagtacaagctttgacaggatgcaaacagctatg
aaaacttttgcagtagatgacacaagtgttagtgggtatatatatcatcatttgttggga
catgaggttgagattcaactggttcgtaatactctacctcgtcgttttggtgctccaggc
ctccctgagttgaatgcatctcaggtttttgctgttaaaagtgttcttcagaagcctatc
agtctgattcaaggaccacctggcacaggcaagactgtcacttctgctgcaattgtttat
cacatggccaaacagggccagggacaggttctggtatgtgctccaagtaatgtagccgta
gatcaattagctgagaaaataagtgccactggcttaaaggttgtcaggctttgcgcaaaa
tcaagggaagctgtgagctctcctgttgagcatctgaccctccactatcaggtccgtcac
cttgacacatctgaaaagagtgaacttcacaagttgcaacaactgaaagatgaacaggga
gaactgtctagcagtgatgagaagaagtacaaggcactaaagcgagctacagagagggag
attactcaaagtgcagatgtgatttgctgcacctgtgtgggcgctggagatcctcgatta
tctaactttaggttccgccaggtacttattgatgaatctactcagtcaacggaacctgag
tgtcttattcctctggttcttggggcaaagcagattattcttgttggtgaccattgccag
cttggtccagtcatcatgtgcaagaaagcagcacgtgctgggctagctcagtctctcttt
gaacgccttgttatgctaggcgtgaaaccgattaggctgcaggttcagtaccgaatgcac
ccatctctgtcagaattcccttctaatagcttttatgaaggtaccctgcaaaatggagtt
acaattaacgaaaggctgtcatcaggcattgatttcccgtggcctgtgcctaatcgtccc
atgtttttctatgtccagatgggacaagaagaaataagtgccagtgggacatcctattta
aatcgtactgaggctgcaaatgttgaaaagattgtaaccacctttttgaggagtggtgta
gtccctagtcagattggggtcataactccgtacgaggggcagagagcatatattgtaaac
tatatgtccagaaatggtgctctcaggcagcaactttacaaggaaattgaggttgctagc
gttgattcatttcaaggaagggaaaaagattacatcattttgtcttgtgtgagaagtaat
gaacatcagggcattggatttcttaatgatcctcgtaggctgaatgtggcattgacacgt
gcacgatatggtattgtcattcttgggaaccctaaagttctaagcaagccactgttatgg
aatggcttgttgacacactataaggagcacgagtgcttggtagaagggcctttaaataac
ttgaagcagagtatggttcaatttcaaaagcccaagaagatctacaacgacaggagactt
ctctttcttggtggacctggtatcgtacctaatgataactttgggtccagtgcatcatct
accccaaatgctgatagaagaagcagtcgtgctaggggttcttatatgccacctggacct
cctaacggtacccacaagcctggagttcatcctgctgggtttcctatgccccgtgttccg
attccaccatttcatggtggtccacattctcagccatatgccattccagcacgtggagct
gtgcatgggccagttggagctgttcctcatgtccctccaccaggaagtcgagggtttggt
gctgggcgtggcagtgctggtgcgcccataggcagtcatctacctcaccatcaaggcaca
caacaaactgttggaaatattgggactaatttcaattttcctgcccttgagaatccgaat
agtcagccatcagttggaggtccattgtctcagcctggttatgttaacaatatgccagtt
caaggtcaaagccaaacattccgagatggattttccatggggggcatgtctcaggacttc
ttgggtgatgacttcaagagccagggatcacatgttccttataacgttgctgatttctca
actcaggcttctcagagtggatatgctgttgattatgttacacaaggagctcaaggtggt
tttccaggaaacttccttaaccagaattctcaagctggatactcccgttttggttctgga
aatgatttcatgtcccaggactacatgactcatggatcacaagggctctacactcaggtt
ggctttaataatgacccttcacaagatgattcatctcaaaaccattttggtgtggccaat
cccaattcactccagtcccagggcttgatgagttctctctactcccagccttttgcccat
tacaacacacagccactgaacttgcaggctccacaacagcagcctcagcaaggtcaaggc
tctctaaaccagaacgttcattacaatggttga
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