Tripterygium wilfordii (thunder duke vine): 119991643
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Entry
119991643 CDS
T07256
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119991643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
119991643
03019 Messenger RNA biogenesis [BR:
twl03019
]
119991643
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119991643
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119991643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
BCMA-Tall_bind
Motif
Other DBs
NCBI-GeneID:
119991643
NCBI-ProteinID:
XP_038693948
LinkDB
All DBs
Position
3:10889762..10897084
Genome browser
AA seq
1028 aa
AA seq
DB search
MEMESSRRLFDRSRELGVKKPRIEEPNPNGHGRPFLQRPVTPATGPTARYRSADRDSDSN
DSNRGGAYHPQPPQQLHQELVTQYKTALAELTFNSKPIITNLTIIAGENLLAAKAITATI
CAHILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAFRHVDSPVHQSMRHL
FGTWKGVFPPQTLQMIEKELGFTPLVNGSSIGAASRLDSQSQRPPHSTHVNPKYLEKQRL
QQSSRAKGMPNDITGGIAGSTEEMEKSDRASTITSRPWADPRIKMQNIQRSQKDALSDSA
AYGDFEYSSDLSRPSGLGIGRTSGRVMEQGHDKSLHGSSSSASGTISGQRNGFNAKQWLP
SYSSLKSVNVDLHPKPAQSIVGRTSSGLSSSWKNSEEEEFMWEMHSRVADHDIASLSTNS
RKDHWAPHDSEKLGYESHLRKPHGAHDVGSKFERENSADSLPNEQKEQATYGHQMLSPWR
SQESHSVEGLISSGNRIINSSHSQSYSASFGELATNSGYLSRVGDQQQMGSSHIGALGFG
FLGTLAQPRFQPLGGASPSGQSPIHQHPPSPSFPERRGHEQLQSITEQDHQLAQPVPRPD
FRASQFTRQLAGNQSTKEPSTVLPSDILHSNLQKSQPQDLRDSSSSDQTQRPPSTIVNSA
SDHSDPLAANTSGQLSTSCLLAEVMKSGIFSNNAITVNNPNRGSLDTLQVLSKPNIQPPL
TRGPTPTSAASDISETKVERPPLSLGPAPSSSQTSDVVSQTPDPISNLLSSLVAKGLISA
SKMETSTTMSSQTPSQLKGMDSVTVTPISTPVTSVPTSLVASHLSIVDETSVSEPTGNSS
DSLPQSSKIRVENTIGLQFKPDLIREMHPNVINELFDDLLHCCSLCGLRLRLREQLDRHL
EWHASLKAPEPSGLSRVSRGWYSNSEDWIYGRQRLPLVSDSAVPIEESEEGTDENAALVP
ADENQCVCVLCGELFEDFFCQERNGWMFKGAVYFTRPLGDGEMETAHERDGNVPIVHEDC
MSNNSVPD
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttcacgtagattgtttgatagatcgagagagctcggcgtaaagaaa
ccacgaattgaagagccgaaccctaacggtcatggccggcccttcttgcagagaccagta
actcctgctaccggaccaacggctaggtacagatctgctgatagagactcggatagcaat
gattcaaaccgcgggggcgcgtatcacccacagccgccacagcagctacatcaggagctt
gtgacccagtacaagactgcgctcgcggagctcactttcaattccaaacctataattact
aacttgactattatagcgggcgagaatctccttgcagccaaggccatcactgccactatt
tgcgctcatattcttgaggttcccagtgagcaaaagctgccatccctgtatctgttagac
agtattgtgaagaatattgggagggattacatcaaatattttgctgcccgactacctgag
gtattcatcaaggcattcaggcatgttgattctcctgttcatcaaagtatgcggcatttg
tttgggacatggaaaggggtttttcctcctcagacacttcaaatgattgagaaagaactt
ggctttactcctttggttaacggttcatctataggagctgcatctagacttgattcacag
tcgcaacgtccaccacatagcactcatgtaaatcccaagtatttggaaaagcagcgcctt
cagcagtcaagcagggccaaaggaatgcctaatgacatcacgggtggtattgctggctca
actgaggaaatggagaagtcagacagagcatccaccattacttctcgcccatgggcagat
cctcggatcaaaatgcagaatattcagcgttctcaaaaagacgcattaagtgatagtgct
gcatatggggactttgaatacagctctgatctttcaaggccttcaggcttggggatcggc
agaaccagtggaagggttatggagcaggggcatgacaaatctttgcatggatctagcagt
agtgcttcagggacaatatctggtcaaaggaatggtttcaatgccaagcaatggttacct
agttattcaagtcttaaatctgtaaatgttgatttgcatccaaagccagctcaaagcatt
gttggtaggaccagcagtggactgtctagtagctggaagaattctgaggaagaggagttc
atgtgggaaatgcactctagggttgcagatcatgatatagctagtctctccacgaactca
aggaaagatcattgggctcctcatgattcagaaaaattgggatatgaaagccacctccgg
aaaccacatggtgcacatgatgttgggtcaaaatttgagagagaaaactcagctgattca
ctacctaatgaacagaaagaacaagccacatatggccatcaaatgctgtcaccatggaga
tcacaggagtcacactcagtggaagggcttatcagttctgggaatcgtattattaattct
agtcattctcaaagctattctgcatcttttggtgagttggcgacaaattcaggttattta
tccagggtaggagatcagcagcaaatgggttcatctcatattggagccttaggctttggc
ttccttggaaccttagcgcaaccacgatttcagcctcttggaggtgcatcaccatctgga
cagtcacccattcaccagcatcctccctcaccttcatttccagaacgccgtgggcatgaa
caattgcaaagtatcactgagcaagaccatcaactagctcagccagtgcctcgtcccgac
ttcagagcttctcagtttacgaggcagttggctggtaaccaatccaccaaagagccttct
acagtattgccttctgatattctacacagtaacttgcaaaagtcacaacctcaggactta
cgagattcatcttcttcagatcagactcaaaggccaccctcaactattgtaaattctgcg
tcagaccattcagatcctcttgctgctaatacatcaggacaattgagcacgagttgttta
ttggcagaagtcatgaaaagtggaattttctcaaacaacgcaattactgttaacaaccca
aataggggttctttggatactctgcaggtgctgtcaaaaccaaatattcaacctcctctg
acaagagggcctaccccaacatcagctgcctcagatatttctgagacaaaggtggaacgg
ccaccattgtcacttggtccagcaccttcatcatcacaaacttctgatgtggtgagtcag
acccccgatcccatttcaaatctgttgagctctttagtagcaaagggtttgatatctgca
tcaaagatggagacttcaactaccatgtcatctcaaacgccctctcaactgaagggcatg
gactcagtcactgttaccccaatctctactccagttacttcagttccaacttccttagtt
gcttctcatttgtctattgtggatgaaacttctgtttcagaacctactggcaatagctct
gattccttacctcaatcctccaaaattcgggtagaaaataccataggtttacagtttaag
cctgatctaattcgagaaatgcatccaaatgtgatcaatgaattattcgatgaccttctg
cattgttgcagcttatgtggccttcgacttagactaagagaacaactggatagacatttg
gaatggcatgcttcacttaaggcacccgaaccaagtggtttaagtagggtatcgagggga
tggtattcaaattcggaggactggatttatgggcggcaaagacttcccttggtttctgat
tctgcagttcccatagaagagtctgaggagggaacagatgagaatgcagcattggttcct
gcagatgaaaatcagtgcgtatgtgttttgtgtggtgagctgtttgaagattttttttgc
caagaaagaaatggatggatgttcaaaggagcagtgtatttcactcgtccattgggagat
ggtgagatggaaacagcacatgagagggatggcaatgttcccattgtgcatgaagattgt
atgtcaaataattcagttcctgactga
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