Tripterygium wilfordii (thunder duke vine): 120003918
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Entry
120003918 CDS
T07256
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120003918
03015 mRNA surveillance pathway
120003918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120003918
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120003918
mRNA cycle factors
P-body specific factors
120003918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
BrkDBD
Motif
Other DBs
NCBI-GeneID:
120003918
NCBI-ProteinID:
XP_038709004
LinkDB
All DBs
Position
8:10766301..10773857
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AA seq
490 aa
AA seq
DB search
MKDPLKRTKVVIRQLPPSLSKTDLLSQIDGRFFDCYNWFCFRPGKFSQKNQRYSRAYINF
KRPEDVFEFAEFFNGHVFVNEKGHQFKTIVEYAPSQLVPKPCARKDSREGTIYKDPDYLE
FIKLIAKPVEHLPSAEIQLERKEAEQSGTGKEDPVITPLMDFVRKKRAAGNGTRASFGKV
SRRNGQKPSSKHGSPATKRISENKKYIQKDSIKNRNRKDKSNATSAARREDQPATLTAGS
TEGSITGITLNADSGKKKILLLKGKEHEIPNVSEGMLPQPGVISAGESMPISIFQKQNQR
REAGGRMIRSILQKNEPRQSQSSTAVQPQQKIPNLNLENGKQSQRATNARGGSVGHVPDD
KSPALDSEGEAKRTSVDRFMKKDIHGLDTVSQKQEKRVRTRDRPDRGVWAPLRRSDVPPS
QESISPTVTQSTQSPTDSVEGSRRHFGHHGPANLTKDESSLNTTDGKHSKRGGAAGFGVH
EKQMWVQKTS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacccattgaagaggacgaaagtggtgattaggcagctacctccttctctctcc
aagaccgatctcctctctcaaatcgacggccgcttctttgactgctacaactggttctgc
ttccgtccgggaaagttcagccagaagaatcagagatattctcgagcatacataaacttt
aagaggcccgaagatgttttcgagtttgctgagttcttcaatggacatgtttttgttaac
gagaagggacatcagttcaagaccattgttgaatatgcaccttcacagctagttcctaag
ccttgtgccagaaaggacagtcgtgaagggaccatctataaagatcctgactatctggag
ttcatcaaacttattgccaaacctgttgaacatcttcctagtgctgaaattcagctggaa
aggaaagaagcagaacaatctggtaccgggaaagaagaccctgtcattacaccacttatg
gattttgttcgtaaaaaacgggctgctgggaatggaactcgggcctcatttgggaaggtt
agcagaagaaatgggcaaaagccttctagcaaacatgggtcacctgcaaccaagcgaatc
tctgaaaataaaaagtatattcaaaaggacagcataaagaataggaatcggaaggacaag
tcaaatgctacatcagcagccaggcgagaggatcagccagctactctaactgctggcagc
accgaaggttccatcacaggaattactttgaatgctgattcaggaaagaaaaaaattctg
cttcttaaaggaaaagagcatgaaattcctaatgtgtcagaaggcatgctgccgcagcca
ggtgtaatatctgctggagaaagcatgcccatttctatttttcaaaagcagaatcagagg
cgtgaggctggtgggaggatgataagaagcatacttcagaaaaatgaaccacgtcaaagt
caatcttcaactgctgttcagcctcagcagaaaattccaaacctgaacctggaaaatggg
aaacaatctcaacgggcaactaatgcacgaggaggttctgttggtcatgtacctgatgat
aaatcacctgcacttgactctgagggtgaagcaaaaaggacatcagttgataggttcatg
aaaaaggatatacatggtttggatacagtttcccagaagcaggaaaaacgtgtaagaacc
agggatagaccagatcgtggcgtctgggctcctcttcgtcgttctgatgttcctccaagt
caggaaagcatatcacccactgtgacacagtctactcaatcgcctactgattctgttgaa
ggctcgcgcagacattttggtcatcatggaccagccaacctaacaaaggatgaaagctct
ttgaacacaactgacgggaagcattcaaaaagaggaggtgcagcaggctttggtgtccat
gagaaacaaatgtgggttcagaagacttcttga
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