Tripterygium wilfordii (thunder duke vine): 120005338
Help
Entry
120005338 CDS
T07256
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120005338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twl03400
]
120005338
Enzymes [BR:
twl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120005338
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120005338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
120005338
NCBI-ProteinID:
XP_038710851
LinkDB
All DBs
Position
9:complement(11431550..11454905)
Genome browser
AA seq
1167 aa
AA seq
DB search
MKGETTKVSVLVSLFNWMQRSKSSAKKRSKFRKFIDTFCDKTDYFTAIRLILPSLDRERG
SYGLKESVLATCLIDALGISRDSPDALRLINWRKSGSTGGVNAGNFPLVAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTDILSTMIQKTNAQEMKWIIMIILKDLKLGISEK
SIFLEFHPDAEDLFNVTCDLKLVCEKLRDPNQRHKRQDIEVGKAVRPQLATRVGDATTAW
KKLQGKEVVVECKFDGDRIQIHKNGAEIHYYSRNFLDHSEYDHAMSNIIEQNVLIDRCIL
DGEMLVWDTSMNCFAEFGSNQETAKAARDGFDSDRQLCYIAFDILYVGDTSVIHQSLKER
HELLRKVVKPLKGRLDILLPDDGLNTSRPPGEPCWSLIAYDVNDVERFFKETVENRDEGI
VLKDLGSRWDPGDRGGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAEH
AAPNAYPRRFFSFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKGPPSFYQVTNNSKERP
DVWVESPEKSIILSITSDIRTIRSEVFAAPYGLRFPRIDRVRYDKPWHECLDMQSFVELV
HSSNGTTQKDIEYGGVQDSKPKRMKSSTKREKQNVSVVPNHFVQTDISDIKGETLIFSNM
MFYFVNVPPTHSLDSFHKMVVENGGTFSMNLNNSVSHCVAAESKGIKYQAAKLRTDIIHY
SWVLDCCLQKKLIHLHPKYFLHLSDSSKKKFQEDIDEFADSYYWDLDTADLKQLLSKIDT
SEDSKTVDYYKKKYCPTDRWSRFHGCCIYFYPSMNSLTPDSEVLLGLVLRRLKLEVLMGG
GKECKILFHATHLVVLSVPGSDLDFSSLMKSFTTEEKHLLLNKRLHVVGYQWLEDCLKME
EKLPEDGYSMKPRGMEVSAYEECKDDLNIKEASSDMVVAENLSVPYLPDRDEKQEENKAA
FINSRTLDSYKSDGKRKRGRPVGQATKKRNMNIKQARRMQTHCKKKPAKIHDDESDTSSS
ADEKINEGMEVLEDSASSQRDKQVEPKAAEESGQELQFNNEDPGMEKSVRYCSQFGKKLE
SRHEMQFGNEDPEFKCQIAKNPEKCEAVVDPVHAMLLDMIPSLGIKKNETAQSFVGDDKV
PEETNTGLVKKKKVSYKDVASELLKDW
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggagagacgaccaaggtgagcgtgctagtgagcttattcaactggatgcagagg
agcaagtcttcggccaagaagcgctccaagttccgcaagttcatcgacaccttctgtgat
aaaaccgactacttcaccgccatccgcctcattctcccctcgctcgaccgagaacgcggc
tcctacggcctcaaggagtccgttctggcaacctgcctcattgacgccctaggtatctcc
cgggactctcctgacgccttgcgcctcatcaactggcgcaagagcggctccaccggcggt
gttaatgctggaaactttccgcttgttgctgccgaggttttgcagcgaaggcaaggaatg
gcttctggcggtctcactattaaggagttgaacgacttgctggatcgcttggcctccagc
gaaaacagggcagagaagactgatattctttctaccatgattcagaaaacaaatgcacag
gaaatgaagtggatcataatgataattctgaaagatttgaagttgggaattagtgagaag
agcatatttcttgagtttcatccagatgctgaagacttatttaacgtcacatgtgactta
aaattggtttgtgagaagttaagggatccaaatcaacggcataagcgccaggacatcgaa
gttggaaaggctgtgcgccctcagttagctacaagggttggtgatgcaactactgcttgg
aaaaagcttcaagggaaggaagtggttgttgagtgtaagtttgatggtgatcgtatccaa
atacataagaatggagctgagatacactactactctaggaactttcttgatcattctgaa
tatgatcatgccatgtcaaacataattgagcaaaatgttttaattgataggtgtatactt
gatggtgaaatgttagtgtgggatacatcaatgaattgctttgcagagtttggttctaat
caggaaacagccaaggctgcgagggatggatttgacagtgacagacagttgtgctatatt
gcatttgatattctttatgtgggagataccagtgttattcaccaaagcttgaaggaacga
catgagcttctgcgaaaagttgtgaagcctttgaagggccgtttagacatcttattacct
gatgatggtcttaatacttcccgccctcctggtgaaccttgttggtcactcatagcttat
gatgtgaatgatgtcgagagattttttaaagaaactgttgaaaacagagatgaaggaatt
gtattgaaagatcttggctccagatgggatccgggtgaccggggcggaaagtggttgaag
ttgaagccagattacattcgtgctggttctgatttagatgttcttatcatagggggatac
tatggctctgggcgtcgtggaggagaggttgctcaattcttagttggcctagcagagcat
gcagcaccaaatgcttatccaaggagatttttttccttttgcagggtgggcactgggctt
tctgatgatgaattagatgctgttgtaaccaaactgaagccttactttaggaaatatgaa
tatcccaagaaaggtccaccaagtttctatcaagttacaaataattcaaaagagagacct
gatgtttgggttgaaagccctgaaaagtcaataatactttctataaccagtgatatccgg
accattaggtctgaggtatttgctgcgccatacggcctgagattcccacgcatcgacaga
gtgagatatgacaagccttggcatgagtgccttgatatgcagtcttttgtggaactagtg
cattcaagtaatggtaccacacagaaggatatagaatatggtggcgtgcaagatagtaaa
ccaaaacgcatgaaatcctccacaaagagagagaagcagaatgtctcggtagttccaaat
cattttgttcagacagatatctctgatattaaaggggaaaccttgatattctcaaatatg
atgttttactttgtgaatgtgcctccaacccattctcttgattcattccacaaaatggtt
gtggagaatggtggaactttctcaatgaatttgaataactcggttagccattgtgttgca
gctgaaagcaaggggatcaaatatcaggctgcaaagcttcgcacagatataattcattat
tcgtgggtattggattgttgtttgcaaaagaagctgatccatttgcacccaaagtatttc
ctccacctttctgactcttcaaagaagaagtttcaggaagatatagatgaattcgctgac
tcttactactgggatctcgatacggcagaccttaaacagctcttaagcaaaattgataca
tcagaagacagcaaaactgttgactattacaagaaaaagtattgtcctacagacagatgg
tctcgctttcatggttgctgcatctacttctatccgtctatgaattctttaacacctgat
tcagaagtgctactgggacttgtgctaaggaggctgaagcttgaagttctcatgggtggt
ggtaaagagtgcaaaattctctttcatgctacacatttggtggtcctgtcagtgccagga
tctgacctggacttcagttctcttatgaaaagttttaccaccgaagagaaacatcttttg
ttgaacaagaggttgcatgttgttgggtaccaatggctggaagactgcttgaaaatggag
gaaaaattgcccgaggatggatatagcatgaagcccagagggatggaagtatcagcttat
gaagagtgcaaagatgacctgaatatcaaggaagcctcttctgatatggtggttgccgaa
aacctgagtgtgccttatttacctgacagggacgaaaagcaggaagaaaataaagctgct
tttataaattccagaacattggattcatataaaagtgatggcaaaaggaaaagagggaga
cctgttggtcaggccacaaagaaacgtaacatgaacatcaaacaagctcgacgaatgcag
acacattgtaaaaagaagcctgctaaaattcatgatgacgaatcagacacaagcagttct
gcagatgaaaaaataaatgaaggaatggaagtactggaagattctgcatcatcccaaaga
gacaagcaagttgaaccaaaggctgcagaagaaagcggacaggaactgcagtttaataat
gaagatcctgggatggaaaagagtgtacggtattgcagccaatttggcaagaagctggaa
agcagacatgaaatgcagtttggcaatgaagatcctgagtttaaatgccaaattgccaaa
aatcctgaaaagtgtgaagctgtggttgatccagttcatgcgatgttacttgacatgatt
cctagccttggaataaagaagaatgaaactgcacaatcatttgttggggatgataaagtt
cctgaagagaccaatacagggcttgtgaagaaaaagaaagtcagctacaaggatgtcgct
agtgaacttctcaaggattggtaa
DBGET
integrated database retrieval system
