Tripterygium wilfordii (thunder duke vine): 120016903
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Entry
120016903 CDS
T07256
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120016903
03015 mRNA surveillance pathway
120016903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016903
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120016903
5.6.2.5 RNA 5'-3' helicase
120016903
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120016903
mRNA cycle factors
Common to processing body (P body) and stress granule
120016903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
nSTAND3
UvrD-helicase
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
120016903
NCBI-ProteinID:
XP_038725804
LinkDB
All DBs
Position
15:3821097..3834833
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AA seq
1273 aa
AA seq
DB search
MDPQQSNLYETASQPDTGTDAYTFLEFNTQGESDFDYPEFRSQVAWPTPSDSLTASSLEP
TSDHRGGTSLSSDHHSESPVVSPVSSSTAKGGGRGGGAGGNSSSAVEALGAGMSGLNFEE
TGDDDGYEFGKGEFTEHACRYCGVSNPACVVRCNAPSCRKWFCNSRGNTSGSHIVNHLVR
AKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDM
NWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEK
PGVDDEPQSVAVKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRI
AYFVFSKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTTQEEVALELRANQGVPI
DVNHGFSVDFVWKSTSFDRMQTAMKTFAVDETSVSGYIYHHLLGHEVEAQLVRNTLPRRF
GAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS
NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK
DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQA
TEPECLIPLVLGAKQIILVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLGVKPIRLQVQ
YRMHPSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYVQMGQEEISGSG
TSYLNRTEAANVEKIVTTFLRTGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEI
EVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK
PPLWNSLLSHYKEYECLVEGPLNNLKQSMVQFEKPKKIYNDRRLFFLGGPGVVLNGNFGS
SALSTPSADRSSSRSRGSYMPPGRPNGTHKPGVHPAGFPMPRVPISPFHGGPPSQPYAIP
RRGAVHGPVGAVPHVPPPGSQGFGPGRGSAGAPIGSHLPHHQGTQQTIGNIGTNFNFPAL
ENSNSQPSVGGPLSQPGYINNMPVQGQSQTFREGFSMGGMSQDFLGDDFKSQGSHVPYNV
ADFSTQASQNGYAVDYVTQGAQGGFPGNFLNQNSQAGYSGFGSGNDFMSQDYMTHGSQGL
FTQVGFNDPSLDESSQNRFGVANPNSHSSQGLMNSLYSQPFAHYNTQPLNLQASQPQPQQ
GQGSQNQNQHYNG
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggatccacagcagagtaacctctatgagactgcgtcgcagcccgacacaggcaccgat
gcatacactttccttgaatttaatacacagggcgaatccgacttcgactaccctgaattc
cggtcccaggtggcctggccgacgccctctgattctctcaccgcctcgtctttagagccc
acctctgaccaccgtgggggcacatcattatcgtccgatcaccactctgagtcccctgtt
gtgtctcctgtgtcctcgtccactgcaaagggtggtgggcgcggtggaggagcaggcggg
aatagcagtagtgcagtggaggctctaggagctgggatgagtgggttgaattttgaggag
actggggatgacgacgggtatgagttcggaaaaggggaattcaccgagcatgcctgtagg
tattgtggggtgtctaaccctgcctgtgtggtacggtgtaacgctccgtcttgccgcaaa
tggttctgtaattcaagagggaacacgtctggctcgcatattgtgaatcacctagtccga
gcaaagcacaaggaagtttgtctccacaaagacagtcctttgggagaaactattcttgaa
tgctacaattgcggctgtcggaatgttttccttcttggatttatttcagccaagacagag
agtgttgttgttcttctctgcagagaaccttgcttgagtgtcaatgcgttgaaggatatg
aattgggacctgagtcagtggtgtcccctgattgatgatagatgttttcttcagtggctt
gtaaagatcccatctgaacaggaacagttgagggcacgccaaattagtgcgcaacaaatt
aacaaggtagaagagctttggaagactaatcctgatgctacccttgaagaccttgagaag
cccggggtggatgatgagcctcaatctgtagccgtaaagtatgaagatgcatatcagtat
caaaatgtatttgctccacttattaagcttgaagctgactatgataaaatgatgaaagaa
tctcagagtaaggacaatgtcacagttcgatgggatatcggtcttaacaaaaagcgtatt
gcatactttgtattttcgaaggaggacaatgagttgcgcctcgttcctggtgatgagctg
cggctgcgttactctggagatgcagctcatccagcttggcagtctgttggacatgtgatc
aagctaaccacacaagaggaggtagcacttgagcttcgtgctaatcagggcgttcctatt
gatgtgaaccatggttttagtgttgattttgtatggaagagtacaagctttgacaggatg
caaacagctatgaaaacttttgctgtagatgaaacaagtgtcagtggatatatatatcat
catttgttgggtcatgaagttgaggctcaactggttcgtaatactctacctcgtcgtttc
ggtgctccaggcctccctgagttgaatgcatctcaggtttttgctgtgaaaagtgttctt
cagaagcctatcagtctgattcaaggaccgcctggcacaggcaagactgtcacttctgct
gcaattgtttatcacatggccaaacagggccagggacaggttctggtttgtgctccaagt
aatgtagctgtagaccagttggctgagaaaataagtgccactggcttaaaggttgtcagg
ctttgtgcaaaatcaagagaagctgtgagctctcctgttgagcatctgaccctccactat
caggttcgtcacctcgacacatctgaaaagagtgaacttcacaagttgcaacaactgaaa
gatgaacagggagaactgtctagcagtgacgagaaaaagtacaaggcactaaagcgagct
acagagagggagatttctcaaagtgcagatgtgatttgctgcacctgtgtgggcgctgga
gatcctcgattatctaactttaggttccgccaggtacttattgatgaatcgactcaggca
acagaacccgagtgtcttattcctttggttcttggggcaaagcagattattcttgttggt
gaccattgccagcttggtccagtcatcatgtgcaagaaagcggcacgtgctgggctagct
cagtctctctttgaacgccttgttatgctaggagtgaaaccaattaggctgcaggttcaa
taccgaatgcacccatctctgtcagaattcccttctaatagcttttatgaaggtaccctg
caaaatggagttacaattaatgaaaggctatcatcaggcattgatttcccgtggcctgtg
cctaatcgtcccatgtttttctatgtccagatgggacaagaagaaataagtggcagtggt
acatcctatttaaatcgtactgaggctgcaaatgttgaaaagattgtaaccacctttttg
aggactggtgtagtccctagtcagattggggtgataactccatatgaggggcaaagagca
tatattgtaaactatatgtccagaaatggtgctctcagacagcaactttacaaggaaatt
gaggttgcaagtgttgattcatttcaaggaagggaaaaggattacatcattttatcttgt
gtgaggagtaatgaacatcagggcattggatttcttaatgatcctcgtaggctgaatgtg
gcattaacacgtgcacgatatggtattgtcattcttgggaaccctaaagttctcagcaag
ccgccgttatggaatagcttgttgtctcactataaggagtatgagtgcttggtagaaggg
cctttaaataacttgaagcagagtatggttcaatttgaaaaacccaaaaagatctacaat
gacaggagacttttctttcttggtggacctggtgttgtacttaatggcaactttgggtcc
agtgcattatctaccccaagtgctgatagaagcagcagccgttctaggggttcttatatg
ccacctggacgtcctaacggtacccacaagcctggagttcatcctgctgggtttcctatg
ccccgtgttccgatttcaccatttcatggtggtccaccttctcaaccatatgctattcca
agacgtggagctgtgcatggaccagttggagccgtccctcatgtccctccaccaggaagt
caagggtttggtcccgggcgtggcagtgctggtgctcccataggcagtcatcttcctcac
catcaaggtacacagcaaactattggaaatattgggactaatttcaattttcctgccctt
gagaattcaaatagtcagccatctgttggaggtccattgtctcagcctggttacattaac
aatatgccagttcaaggtcaaagccaaacatttcgagagggattttccatggggggcatg
tcacaggacttcttgggcgatgacttcaagagccagggatcacacgttccttataacgtt
gctgatttctcaactcaggcttctcagaatggatatgctgtcgattatgttacacaagga
gcacaaggtggttttccgggaaacttccttaaccagaattctcaagctggatattccggt
tttggttctggaaatgatttcatgtcccaggactacatgactcatggatcacaagggctc
ttcactcaggttggctttaatgacccttcactagatgaatcgtcacaaaatcgctttggt
gtggccaatcccaattcacactcgtcccagggcttgatgaattctctctactcccagcct
tttgcccattacaacacacagccacttaacttgcaggcttcacaaccgcagcctcagcag
ggtcaaggctctcaaaaccagaaccaacattacaatggttga
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