Thermoanaerobacterium xylanolyticum: Thexy_0153
Help
Entry
Thexy_0153 CDS
T01505
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thexy_0153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
txy03400
]
Thexy_0153
Enzymes [BR:
txy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thexy_0153
DNA repair and recombination proteins [BR:
txy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thexy_0153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
IstB_IS21
AAA_22
RecG_dom3_C
Cas_Csd1
RapH_N
Motif
Other DBs
NCBI-ProteinID:
AEF16213
UniProt:
F6BFD5
LinkDB
All DBs
Position
161295..164795
Genome browser
AA seq
1166 aa
AA seq
DB search
MFIKPIENLREVGEINEALTDERLPLLIYGLTDSQKAHIAHYIVKKLNKKVLFITYNDVE
AKLMHEDLSSLLNGDAYLIPSRDALFYKVDASSLDITGKKLAAIRRIIDDKPYAFVASID
GVLNKVAPKDVFLKYKRNYKIGDKVDLNEISSFFVTMGYERVPMVEGKGQFSIRGGIIDF
FSPMEEEGFRIELFDDEIDSIRSFDTFTQRSLDNVDEVELFPAREFILEDENIKKGLSNL
SSKVNSYISKIKETQSGRAEKIKKKFDEIMENISETRNITNIGELIGFFYDNLYSIVDYF
DDAFIIVDENMRVKERASNILKEFNENFKSLLLSGEVIPEQSNLLFGYDDILRKLSGKSL
ILMNTIVKSDENIQAKEIVNFVSRTMHPFHGKLDLLADDLKFYRSSGYKVVMLSSNLERG
KLLRNSLIGYGLEVPIIEDEEYDIPEGGVLIYPGTISKGFEYVDAKFALISDVEIFGQSR
RPKRSVKVKSDGRIKNFTELTVGSYVVHVNYGIGKYEGIEKITVDGVTKDYLKIKYAGDD
KLFVPVEQLDLVQKYIGPEDKPPKLNKLGSSDWSKLKKRAKKAVEDIAKDLIKLYAKRQT
MKGYAFSKDTPWQKDFEEKFPYEETEDQLRCIEEIKKDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSNKEQSQIIK
MVADGTVDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSAT
PIPRTLHMSLIGIRDMSVLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYN
RIDGIERIASILKELVPEARIAVAHGQMDEGKLEDIMIGFLNREYDILVCTTIIETGLDI
PNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVISEVAEKRLEAIKEFT
EFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGVSEEDKPNT
AIDIKVSAYIDKEYIEDENQRLEIYKKISSIENEKDVEDIKDELIDRFKEYPKAVEALID
VAYLKALARDANILEITERGNSVILKFKDNKSINSSIVDALVNEFKGKIMFSGQIPPYIT
YKYGKKEDLLKELIDLVSKIKCLQIN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgtttataaagcctatagaaaatttgagagaggttggagaaataaatgaggctctcaca
gatgagaggttaccgcttttaatatatggattaactgattctcaaaaagcacacattgct
cactacattgtaaagaaattaaataagaaggtgcttttcataacatacaacgatgtggaa
gctaaattgatgcatgaagatttaagttcgctgttaaatggcgatgcatatttgattcca
tcaagagatgcgcttttttacaaagtggatgcgtccagtttagacatcacaggcaaaaaa
cttgctgctattaggagaatcattgatgataagccttatgcatttgttgcttcaatagat
ggagtgctaaacaaagttgcgcctaaagacgtgtttttaaagtataaaaggaattacaag
attggcgataaggtggacttaaatgagatttcatcattttttgtcaccatgggatatgaa
agagtccctatggtggaggggaaagggcagtttagcatacgtggcggtataattgacttt
ttttctcccatggaagaagaaggttttaggatagagctttttgacgatgaaattgactct
ataagaagctttgatacattcacgcaaaggtctttggacaatgtagacgaagttgagttg
tttcctgccagagagtttattttggaagatgagaatatcaaaaaggggctttccaattta
agcagtaaggtgaattcgtacatctctaaaataaaagagactcaaagcggcagagcagaa
aagatcaagaagaaatttgatgagataatggagaatatttctgaaaccaggaatataaca
aatataggggaattgataggcttcttttacgataatctttattccatcgttgattatttt
gatgatgcttttataatagtcgatgaaaatatgagagtgaaagaaagggcctcaaatatt
cttaaagagtttaatgagaattttaagtcgttgcttttgtctggtgaagtcatacctgag
cagtcaaatcttttgtttggttatgatgacatccttaggaagctttcgggtaagtcgctg
attttaatgaacacaattgtaaagtctgatgaaaatatacaggcaaaagaaatcgttaat
tttgtatcaagaacgatgcacccttttcacggcaaattggatcttttggcagatgacctt
aagttttacagaagttctggttacaaggttgtcatgctttccagcaatttagagagagga
aaattattgagaaattcccttataggatatggattagaggttcctatcattgaagacgaa
gagtacgacataccagaaggcggtgtgttaatatatccaggtacaatcagcaaagggttt
gagtacgtagatgctaaatttgctttaataagcgatgttgagatttttggccaatcaagg
agacctaaaagatccgttaaagttaaaagtgatggaaggattaagaattttacagagctt
actgttggttcatacgtggtccatgtaaattatggcataggcaaatatgaaggaatagag
aaaataactgtcgacggtgtcacgaaagattaccttaagataaaatacgctggcgatgat
aagctgtttgtgcctgttgaacagttggatttggtgcaaaaatacattggaccagaggac
aaaccgccaaagttaaataagttaggcagcagtgattggtctaagcttaagaaaagggcc
aaaaaagctgttgaagatatagcgaaggatttgattaagctttatgcgaaaaggcagaca
atgaaaggatatgctttttctaaggatacaccgtggcagaaagacttcgaagaaaagttt
ccgtatgaagagacagaagatcagcttaggtgcatagaagaaataaagaaagatatggaa
agcgataaacctatggacagattgctttgcggtgatgtaggatacggtaagacagaagta
gcacttagagctgcgtttaaagctgttgcagatgggaagcaggtggcttttttatgtccc
acgacgatattagccgaacagcactacaataattttgtacaaaggtttaaagattttcca
gtcaagattgagatgctttctcgttttagaagcaacaaggaacaatcgcaaataattaaa
atggtagctgatggtaccgtagacattctggtggggacacacaagattttgcaaaacgat
gtgaagtttaaagaccttggacttttaatcatagatgaagagcagagatttggtgtaaaa
cataaggagaagattaaaaaacttaaggaaaacatcgatgtattatctctttctgcgaca
cctattccaaggacacttcacatgtcccttatcggtataagagacatgagcgtattggag
aatcctccagaagataggtatccagttcagacatatgtggtagaatttaatgaagacctc
ataagagatgcaattttgagggaattagggcgtggaggacaagtttactttgtctacaac
agaattgatggcattgaaagaattgcttcgattttaaaagagttagtgcctgaagctcgt
attgctgttgcacatggtcagatggatgaaggaaaactggaagatatcatgataggattc
ttaaacagggaatatgacatattagtgtgtactacaataattgaaacgggcttggacata
ccaaatgtaaataccataatagtgtatgattcggataagatggggctttcgcaattgtat
caattaagaggaagagttggaaggtctaatagattagcttatgcgtattttacttacagg
aaagataaagttatttcagaagtggcagaaaagaggcttgaggcaataaaggaatttacg
gagtttggctcagggtttaaaatcgccatgagagatttagagataagaggtgctggaaat
cttttgggagctgagcaacatgggcatatagatgctgtagggtatgacatgtacctgagg
cttctcgatgaggcaatcaaaaacttaaaaggggtatctgaagaagacaagcccaataca
gcaatcgacattaaagttagcgcttatatagataaagagtatattgaagatgaaaatcaa
aggcttgagatttataaaaagatttcttctatcgaaaacgaaaaagacgttgaagatata
aaggacgagcttattgacaggtttaaagagtatccgaaagccgtagaagctcttatagat
gtggcttatttaaaagcgctggcaagagatgcaaacatattggagattactgaaagagga
aattccgtaatcttgaagtttaaggacaataagtctataaattcaagcatagttgatgct
ttagttaatgaatttaaaggtaaaataatgttttcaggtcaaattccgccatacatcacc
tataaatatggcaaaaaggaagacttattgaaggaattgatcgatttggtcagcaagatt
aaatgtttgcagataaattaa
DBGET
integrated database retrieval system
