Thermoanaerobacterium xylanolyticum: Thexy_0579
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Entry
Thexy_0579 CDS
T01505
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Thexy_0579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
txy03400
]
Thexy_0579
Enzymes [BR:
txy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Thexy_0579
DNA repair and recombination proteins [BR:
txy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Thexy_0579
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEF16630
UniProt:
F6BHW1
LinkDB
All DBs
Position
complement(607089..608012)
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AA seq
307 aa
AA seq
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MSLMDEKISPMLAISGNVFDDPSWVYEIKWDGSRTIAFLSSTTKLQDRRLVDISHQFPEL
MEVNKCLKSNEAILDGELIVLKDNKPSYRNIMMRKHQQNKLKIELLSKYNPAIFITWDVI
YVDGKELLNYPLIKRKEILSKIVSEGNLIRISDYIFGQGKTLFAETGKKQLEGVMAKKAD
SKYYLGKRSSLWQKFKHHIILNAVILGYKIDKTALVLGLYNEDDKLVHIGNVESGISQKE
LSSFLEVANDLKVNPEFYGLAINNVQWIMPFIVCKVKFMEWSENFKMRAPSFLEFALDVK
PTECRFM
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgatggatgaaaaaatttctcctatgctggctatatcgggaaatgtatttgac
gatccaagttgggtgtatgaaatcaaatgggatggttcgagaacaatagcatttctttca
tctactacaaaacttcaagacagaaggctagtagatataagccaccaattcccagaactt
atggaagtaaataaatgtctaaaatcaaatgaagccatacttgatggcgagctaatcgtt
ctaaaagacaataaaccaagttatagaaacataatgatgcgaaaacaccaacaaaacaaa
ctaaaaatagaacttttaagtaaatacaatcccgcaatatttataacatgggatgtaata
tatgttgatggaaaagagctattaaactacccactgattaagcgcaaagaaattttaagt
aaaatcgtcagtgaaggcaatctaataaggatatctgattatatatttggacaaggcaaa
actttatttgcggaaactggtaaaaagcaactggaaggagtaatggctaaaaaggcagac
tcaaaatattacttagggaaaagaagtagtctatggcaaaaattcaaacaccacataata
ctaaacgctgtaatattggggtataaaatagataaaacagcgttagtcttgggtctttac
aacgaggatgacaaacttgtgcacattggaaatgtagaatctggaatatcgcaaaaagaa
ttatcatcattcttagaagttgccaacgatcttaaggtcaaccctgaattttacggtctt
gccattaacaacgttcaatggataatgccttttattgtatgtaaggttaaattcatggaa
tggtcagaaaatttcaaaatgagagcaccgtctttcttagaatttgccttagatgtgaaa
cctaccgaatgcagattcatgtaa
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