Candidatus Uabimicrobium amorphum: UABAM_06597
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Entry
UABAM_06597 CDS
T07685
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
uam
Candidatus Uabimicrobium amorphum
Pathway
uam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UABAM_06597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uam03019
]
UABAM_06597
03400 DNA repair and recombination proteins [BR:
uam03400
]
UABAM_06597
Enzymes [BR:
uam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UABAM_06597
Messenger RNA biogenesis [BR:
uam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UABAM_06597
DNA repair and recombination proteins [BR:
uam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UABAM_06597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
AAA_30
HHH
Motif
Other DBs
NCBI-ProteinID:
BBM88180
UniProt:
A0A5S9IVB4
LinkDB
All DBs
Position
9282467..9284614
Genome browser
AA seq
715 aa
AA seq
DB search
MTKNKTFSVEESLKVLKSQFGYEEFLPGQKVVIEDVLKREDVVAIMPTGAGKSMLYQLPA
VVFDGTVIVISPLISLMKDQVDSLQQIGVKATYINSTLSSVERHNAMNGMQLGYYDLVYV
SAERLQHQGFQEALRRTKIAMLAVDEAHCISQWGHDFRPDYLKIKDIREYLDFPQTVALT
ATATQIVREEIAERLGLESWADHVAGFDRNNLYFSVVFCASKKTKIERIAEIFDEKGAAG
IVYAGTRKNVEYICNELTRFGMNVQKYHAGLSDSEREAIQNEFMENKIDLIVATNAFGMG
IDKANIRFVVHFDIPGDMESYYQEVGRAGRDRKPASCYLLFNYADTRIPRFFIEEAHPTV
QFAHKMWSFIQNEQVVPSIEQISSECKASSYMTVRYTLGFFERAGLVAKANPGDFYVLTP
SQEGFSILENILSDDAKRKEHDEQKLNNMVKYAYHKGCRRLWILDYFGDTNTKESCHACD
NCKNEVALQEATGEDLINMQKALSAVARLNGRWGKVRIAQLLVGSKSKDLLSLNVNSIPT
YGVLEKYSQTDVCDFLDKLIEVGYIQVRLKDGRYPLLYLTEMGRSVMMGEEKCYFPQDGL
LKQTKTKTKTTKRSSRLDALRNFSKPQKKESKTEIATHGDTLRLYKKLSEMRRRISQEVN
KPAFVVLHNTTLEELAKSKPRTLEEMAQISGIGKVKLEKYGCEILQIINEVDKEI
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaaataaaactttttctgtggaagagtctctaaaagtactcaagagtcaattt
ggctatgaagagtttttaccaggacagaaagtagtcattgaggatgtattaaaacgcgaa
gatgttgtggccattatgcctacaggagctgggaaatcaatgttgtatcaattgccagcg
gttgtatttgatggtacggtcatcgtcatttcacctctcattagtttgatgaaagatcag
gtggatagtctacaacaaattggagtgaaagctacctatattaatagtaccttgagttcc
gtagaacgacataacgcgatgaatggaatgcaactaggttattacgatttagtgtatgta
tctgccgaaagactacaacatcaaggtttccaagaagcgcttcgccgtacgaaaattgcc
atgctggccgtagatgaagcacactgtattagccaatgggggcacgactttcgacctgat
tatctaaaaataaaagatattcgcgaatatttagattttccacaaactgttgctcttacg
gcaacggcaacgcaaattgttcgcgaagaaattgccgagagactaggccttgagtcttgg
gcagaccatgtcgcgggttttgatcgcaataacttgtatttttctgtggttttttgtgca
tcgaaaaaaacgaaaatagagcgcattgcggaaatttttgatgaaaagggagccgcggga
attgtttatgctggtacgcgcaagaatgtagagtatatttgtaatgaattgacgcgtttt
ggtatgaatgttcaaaaatatcacgccggattgtcagacagcgagcgtgaggccatacaa
aacgagtttatggagaacaaaatagatcttattgtggcgacaaatgcgtttggtatggga
atcgataaggcaaatattcgttttgtggtacactttgacattcctggtgatatggaatcg
tactaccaagaagtgggacgcgcaggtcgcgatcgcaagcctgcatcttgctatttgtta
ttcaactatgccgatacacgtataccacgtttttttattgaagaagctcatcccacagta
cagtttgctcataagatgtggagttttatccagaatgaacaagtggttcccagcatcgaa
caaatttcttcggaatgtaaggcctctagttatatgaccgtgcgctacactttgggattt
tttgaacgtgccggccttgtggcaaaagcaaaccctggagatttttacgtgctgactcct
tcccaagaaggattttcgattttagagaatattttatccgatgacgcaaaacgcaaagag
cacgacgagcaaaaattaaacaacatggtgaagtatgcataccacaaagggtgccgacgc
ttgtggattctcgactattttggagacactaacaccaaagaaagttgtcatgcctgcgac
aattgtaaaaatgaagttgcgctacaagaagctacaggagaagatttgatcaacatgcaa
aaagcattaagtgctgtggcacgtttgaatggtcgttggggaaaagtacgtattgcacaa
ctactcgttggctccaaatcaaaagatcttctttcattaaacgtcaacagtatacctacc
tatggagtgttagaaaaatattcgcaaacagatgtctgcgattttttggataagctaatt
gaagtgggttacatacaggttcgcctaaaagacggacgttatccgttactatatctaacc
gaaatgggaagaagtgtgatgatgggcgaagaaaaatgctactttccgcaagatggttta
ttgaaacagaccaaaacaaaaaccaaaaccacaaagcgctcatcgcgactggacgcgctg
cgaaattttagcaaaccgcaaaagaaagaatctaaaactgaaattgcaactcatggagat
actttgcgtttatataaaaaactttcggaaatgcgcagacggatttctcaagaagtaaat
aaaccggcatttgtcgtgttgcacaatactacgctagaagaactggcgaaatcaaaaccg
cgcactctagaagaaatggcgcaaatttctggtattggcaaagtgaagttagaaaaatat
ggctgtgaaattttacaaattatcaatgaggttgacaaagaaatatga
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