Ursus americanus (American black bear): 123779845
Help
Entry
123779845 CDS
T07931
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03013
Nucleocytoplasmic transport
uar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123779845 (UPF1)
03015 mRNA surveillance pathway
123779845 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uar03019
]
123779845 (UPF1)
Enzymes [BR:
uar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123779845 (UPF1)
5.6.2.5 RNA 5'-3' helicase
123779845 (UPF1)
Messenger RNA biogenesis [BR:
uar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123779845 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
123779845 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123779845
NCBI-ProteinID:
XP_045634366
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDGVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagccagacgcagacgcccccgggtggccccggcggccctggaggaggtggcgcgggc
ggcccggtgggcgcgggcgcgggtgctgcggccggacagctggacgcgcaggtcggtggg
ccggagggcatcctgcagaacggggccgtggatgacggcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggctgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccactttggaggac
ctggagaagccgggcgtggatgaggagccgcagcatgtcctcctgcggtacgaggacgcc
taccagtaccagaacatatttggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcccgtggaggtgactcataac
ttccaggtggatttcgtgtggaagtcaacctcgtttgataggatgcagagcgcgctgaag
acgtttgccgtggatgagacctctgtctcgggctacatctaccacaagctgctcgggcac
gaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacaggggctc
cccgacctcaaccattctcaggtgtacgctgtcaagactgtgctgcagagaccgctgagt
ctgatccagggaccaccaggcacggggaagacggtgacctctgccaccatcgtctaccac
ctcgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctaaaagtcgtgcggctctgcgccaagagc
cgcgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccggagctgcagaagctgcagcagctgaaggacgagacgggggagctgtcc
tctgctgatgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccaaggctcgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggtgaccactgccagctgggccct
gtggtgatgtgcaagaaagcagccaaagctggactctctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcatcctgcactc
agcgccttcccgtccaacattttctacgagggctctctccagaacggcgttactgcagcg
gaccgagtgaagaagggatttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaggctgccaatgtggagaagatcaccacgaagttgctgaaggcgggcgccaagcctgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagcgtagatgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagctaacgagcaccaa
ggcatcggatttttaaatgaccccagacggcttaatgtggccctgaccagagcgaggtat
ggggtcattattgtgggcaacccaaaggccctgtccaagcagccgctctggaaccatctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctatgat
cggagtagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcaggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccccccatgccaccgccagggtattttggacaagcaaacgggccagccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggacgtggcgtcgcagccg
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
