Ustilago maydis: UMAG_03944
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Entry
UMAG_03944 CDS
T01021
Name
(RefSeq) hypothetical protein
KO
K12609
CCR4-NOT transcriptional complex subunit CAF120
Organism
uma
Ustilago maydis
Pathway
uma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UMAG_03944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_03944
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
UMAG_03944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH
PH_9
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
23564261
NCBI-ProteinID:
XP_011390413
UniProt:
A0A0D1CME4
LinkDB
All DBs
Position
11:complement(241341..246035)
Genome browser
AA seq
1564 aa
AA seq
DB search
MYNSFSSQTVRPSDASPSYEATQSAQQQDRDAAPRTPPSSGQNFQAFNGRQVAPSSNTTV
NPASSRSFQPSHGHSQSTSVLLNSSSSSRPMFRPQPQQNPSVSNRSGSMRPMSAFQPLDN
PEYYASGGGSSPTATATATATHRPPSPAGSTARSIRSTPQTPLTFKSQDLRSALSLQESQ
QKKLYMEGYLLKRDDLGTDGKPLHVADEKRRWSECFVQLSGTVLSLWNVDQMQEAAKRGS
EVPPTYINITDSFVDFIGLLIEDPKLIPASRGRYHHAFAINSAGNNRTIFCFRDPPPFPP
ESLEQWLAPEHRHKPEHRTVIGWLNLGHRHLQAWINAIRLASWEKVRLEEIYTGALIRAR
LGAVGSPGSANPDTVKDASAASAAEMSIKSPLVKGKMEGWVKARFMGSTEWKKVWMVLTD
HKPDESEFGAKKKFWKIGSSTGDRSSILSVNSVSTSAPGAPTNDGKDLPPPPGSNGAPGV
ASFFESKKDKKPFASLIYAAHAFAVYPSRPELVEGSSLFKVEGVFPSSSVLSATHRVRST
GWVMLMPELETPSSKGANAEMMKWLIAFMDSFKLYGRPETFVWEARDPTSPFFAYPIGPF
KDRLFLDRELAEFLEIAREDHLTTRSSLHGIMAARMRGERTKILQPLPPPSQNALASTQD
ALSRDADEPRTSSRASAAESASQLPPLDFASNQGQPPATGASMAQSGSDQIDRVSQAFRD
PARADAADAESTKGASPESESIRPSRDAVAVPSGSLQPTMQDAAPTQTAQAPASTKSVPV
VTAPVSNTVTASNPAPAPAIVAKQSSTTPYSRDQQGESSSLQALASPSTSAPPPMHGVPP
VQQTVPATESSLAYLAPSDKSQAMSPSSETSATRPPAVFGPSGRGAEQNIVDQPRSTKRD
SDLPTNYDESALFYMASISDQLPATTPQPVVMPAPSRHVVTKESSQASRPQSLAPASGTT
STVQSESTHATRLSSDHQKSASAAPVQAEQVKPEVSAVPRVNPTQDDTINDDALAAYSFL
EQPPSPLVRTNEMSAKPVAADRSAVPLTASSAVPVQPGSDTVPQTSVDSTHSARPAAVQY
PSTFGQNKRAAERKSAAQLQAQAHQEALSRPGRAGVTKPKGIRRPGWVDDSEEEEDDEEE
EDEEDESREDARSISRPLPSAGTVRSAASSNRGGAGTESPVNLADSVGSLGRNNDAASQV
AGANFPRSISGYGASLLDGSRATSPGRSPGRGGAPTHPSIQAYQRQSMFNNHLSAAHGDD
SRSNTPPQGPIVRDRQTFLQLKPEEQPGAMTTVFTPHGLVQAGAQDKAERSAKAQEAEAR
AMGSHMVNVPNKPPPPQAGLLGAITAHERDRKGAGGFGATLTERERERVAAERRQREEDA
LRQQQQQQQMQQMQQMAYFNPMLYQQMMMSGMMGGMGGMGGMGMMGMGMPQMGAFGASQV
GAGSQIGGMGGGFDPMMAQQQAMQAAQMAYMSALSQAHQEGSALGHGSMMGHGSPGAAPG
STMGMPMGSMQFMTSPHMSMMGAPFPGFMTQSAAGGIPSEFGGVGGASPSPRPSSTKPNG
QGNT
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtacaattctttttcctcgcaaacggttcgtccgtccgacgctagcccatcgtacgag
gcgactcagtctgctcagcagcaagatcgtgacgctgcccctcgcacaccaccctcctcc
ggacagaacttccaagccttcaatggccgtcaagtagctccctcgtccaacacaaccgtc
aacccggcctcatctcgcagcttccagccaagtcatggccacagtcaatccaccagcgtt
ctgctcaactcgtcctcctcatcgcgtccaatgttcaggcctcagccacagcagaaccct
tccgtttccaaccgaagcggcagcatgcgtcccatgtcagcctttcagccgctagacaat
cccgaatactatgcttccggcggtggctcgagtccaaccgcaaccgcaaccgcaactgcg
acccaccgtccgccttcccctgccggttccaccgccagatccatccgttccactccgcaa
acgcctctcactttcaaaagtcaggatctgcgtagcgctctcagccttcaggaatcgcag
caaaaaaagctttacatggaaggctacctcctcaagcgcgacgaccttggtacggatgga
aagcctcttcatgtcgccgacgaaaagcgtcgctggtccgaatgctttgttcagctctcg
ggaaccgttctcagcctctggaatgtcgaccagatgcaagaagctgcaaagcgaggttcc
gaggttccacccacttacatcaacatcaccgactctttcgtcgattttatcggccttctc
atcgaagatcccaagcttattcccgccagtcgcggacgctaccatcacgcttttgccatc
aactcggcaggcaacaaccgcaccatcttttgcttccgcgatcctcctccgttccctcct
gaatcgctcgagcaatggctcgctccagagcatcgtcacaagccagagcatcgcaccgtc
attggctggctcaacctcggtcaccgtcaccttcaggcctggatcaacgccatccgcctc
gcctcgtgggaaaaagtccgcctcgaagagatttacactggcgccctcatccgtgctcga
cttggcgcagtcggctcgcccggctccgccaacccggacaccgtcaaggacgcttcggcc
gccagcgccgccgagatgtcgatcaagtctcctctcgtcaaaggcaagatggaaggttgg
gtcaaggcccgcttcatgggttccaccgaatggaaaaaggtatggatggtgctcaccgat
cacaaacccgacgaatccgagtttggcgccaagaaaaagttttggaagatcggctcgtcg
acaggcgatcgctccagtatcctcagcgtcaacagcgtctccactagcgctccaggcgct
cctactaacgacggcaaggatttgccccctcctcctggaagcaacggcgcccccggtgta
gccagctttttcgagtccaagaaagacaagaagcccttcgctagtctcatttacgctgcc
catgcgtttgccgtctacccttcccgacccgagctcgtagagggctcgagtctcttcaag
gtcgaaggtgtctttccctcgagctcagtcctttccgccactcaccgtgttcgcagcact
ggctgggttatgctcatgcccgagctcgagacccccagcagcaaaggcgccaacgccgag
atgatgaagtggctcatcgccttcatggattccttcaagctctacggtcgtcccgaaact
tttgtctgggaggctcgcgatcctacttcgcccttctttgcctaccccatcggccccttc
aaggaccgcctcttcctcgacagagagctcgcagaatttctcgagattgctcgcgaagac
catctcaccacccgatcctccttgcacggtatcatggctgctcgtatgagaggtgagcgc
accaagattcttcagcctcttccaccgccttcgcagaatgccctcgcttccacgcaagac
gctctctcgcgcgacgccgacgaacctcgaacatcttctcgcgccagtgccgccgaatct
gcctctcaactgccgcccctcgactttgcttccaatcaaggccagcctcccgccaccggt
gcttccatggcccagagcggctcggatcagatcgacagagtctcgcaagccttcagagat
ccggccagagccgatgctgcagacgcagaatctacaaagggtgcgtcaccagaatctgaa
tcgatccgcccgtcccgcgatgccgttgcggttccttcaggctcgcttcagcccactatg
caagatgcagcccccacacagaccgcgcaggctcctgcgtcgacaaagtcggtccctgtt
gtcacggcccctgtttccaatacagtcactgcctctaacccagcaccagcaccagcgatt
gttgcgaagcagagcagcacaaccccctactcaagggaccagcagggcgagtcctcgagc
ctacaggctcttgccagtccttctacctccgcgcctcctccaatgcacggtgtgccacct
gtacagcaaaccgtacccgccacggaatcttcgctcgcctatctcgctccttctgacaag
tcgcaagccatgtctccttcctcggagacgtccgctactcggccaccagccgtctttggc
ccatccggtcgtggtgcagagcaaaacattgtcgaccagccccgctcaacaaagcgtgac
tctgacctgcccacgaactacgacgagagtgctctcttctacatggcctcgatttccgat
cagctccctgccaccaccccgcagcctgtcgtcatgcctgcacccagccgtcatgtggtc
acaaaggaaagttcccaggcttctcgccctcaaagtcttgcgcctgcttcgggaacaact
tcgacggtccagtcggaaagtactcacgccacgcgcctgtcctctgatcatcaaaagtca
gcatcagcggctcccgtccaggctgagcaggtgaagcccgaagtctcggcggtaccgcgg
gtcaacccgacgcaagacgacacgatcaacgacgatgctcttgccgcctattcattcttg
gaacagcctccctcgccactagtccgcacaaacgagatgtcagccaagcccgtcgcggct
gaccgcagcgctgttcctttgactgcttcgtccgctgtgccagtgcagcccgggtcggat
acagtccctcaaacgtccgttgacagcacccatagtgcgcgacctgctgccgttcagtat
ccttctacctttggacaaaacaagagggctgccgaacgcaagtctgcagctcagctccag
gcgcaagcgcaccaggaagccctttcgcgacctggtcgtgccggtgtcaccaagcccaag
ggcattcgccgtcctggttgggtagacgatagcgaggaagaggaagacgacgaagaggag
gaggacgaggaggatgagagccgtgaagatgcgcgcagcattagccgacctttaccaagc
gctggcacagttcgctcagctgcaagctcgaaccgtggtggagcaggcacagagtctccg
gttaaccttgctgattctgttggcagtcttggccgcaacaacgatgcagcttcgcaagtc
gccggtgccaacttccctcgctccatctctggttatggtgcaagccttcttgatggctcg
cgtgccacatcgccgggccggtcaccaggccgagggggtgcgcccacgcatccttcgatt
caggcgtaccagcgccagtcgatgttcaacaatcacctcagtgctgctcacggcgacgac
tctcgatccaacacacctcctcagggacctattgtgcgcgatcgacagaccttcctgcag
ctcaagcctgaagagcagccgggcgctatgacgactgtgttcaccccgcacggtctggta
caagccggagcgcaggacaaagcagagcgatcggccaaagcgcaggaggccgaggcgagg
gcgatgggtagccacatggtcaatgtgcccaacaagcctccgcctcctcaagcaggtctt
cttggcgccattacagctcacgagcgcgatcgcaaaggtgctggagggtttggtgcgacg
ctcaccgagcgagagcgagagcgtgtcgcagccgagcgacgccagcgtgaggaagatgcg
ctgcgacagcaacagcagcagcaacagatgcagcagatgcagcagatggcctacttcaac
ccgatgctgtaccagcagatgatgatgtccggcatgatgggtggcatggggggaatggga
ggtatgggcatgatgggtatgggtatgccgcaaatgggtgcttttggcgcttcgcaggtg
ggtgctggtagtcagattggtggtatgggcggtggctttgaccctatgatggcacagcag
caggcgatgcaggcggctcaaatggcgtacatgagcgcactttcgcaagctcatcaggaa
ggatctgcgctcgggcacggatccatgatgggacacggctcgcccggtgcagcacctggg
tcaactatgggcatgccgatgggcagtatgcagttcatgacaagcccacacatgagcatg
atgggtgcaccttttccaggatttatgacgcagtctgcagccggtggaatcccgtctgaa
tttggcggagttggaggggcaagcccgtcgcctcgaccttcgtctaccaagcccaacggt
caaggcaatacctag
DBGET
integrated database retrieval system