Ustilago maydis: UMAG_04080
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Entry
UMAG_04080 CDS
T01021
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase DED1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
uma
Ustilago maydis
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_04080
03041 Spliceosome [BR:
uma03041
]
UMAG_04080
03036 Chromosome and associated proteins [BR:
uma03036
]
UMAG_04080
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UMAG_04080
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
UMAG_04080
mRNA cycle factors
Common to processing body (P body) and stress granule
UMAG_04080
Spliceosome [BR:
uma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
UMAG_04080
Chromosome and associated proteins [BR:
uma03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
UMAG_04080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
23564361
NCBI-ProteinID:
XP_011390514
UniProt:
Q4P733
LinkDB
All DBs
Position
11:645866..647884
Genome browser
AA seq
672 aa
AA seq
DB search
MTYENNTHQQNGAGTADIESRFANMSVQNGAAGGAPRKAYVPPHLRSQQQPASLNSSAAS
FSPRAPAAFNGNGNSNGNGNGPAAPAAPAAFQSFNRGAPRGGAGGWDAPSSGGYGGARNG
GGYGGGARNDGFGQWKDGKHVPGPHNPRLQKELFGEEGDGLHQSMGINFDKYGDIPVEAT
GRDVPEPVTTFTSPPIDAHLLENIKLARYTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKT
GGFLFPILSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQIHDEARKFTY
RSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADR
MLDMGFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGST
SENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSI
HGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGR
TGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVPQWLEAVARESMFGAGGGSRGGRG
RGRGRGGASSFGNRDARTMNGPSSGGGRGFGGGYGGGMGGGLGGSYGAGAAAYGGPPPAS
NGGSYGGNSSWW
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacttacgaaaacaacacacatcagcaaaacggtgctggcaccgccgacattgagtcg
aggtttgccaacatgtcggtccagaatggcgctgcaggcggtgctcctcgaaaggcctat
gttccacctcaccttcgtagccagcagcagcccgcttcgctcaactcctctgccgcttcc
ttcagcccccgcgctcccgccgcctttaatggaaatggcaacagcaacggcaacggcaac
ggccctgccgctcccgctgcacctgccgccttccagagcttcaaccgtggcgctcctcgc
ggtggcgccggtggatgggacgctccctcctctggcggttacggcggcgctcgcaatggc
ggcggttatggcggcggcgctcgcaacgatggattcggccagtggaaagacggcaagcac
gtgcctggcccgcacaaccctcgcctccagaaggaacttttcggtgaggagggcgacggt
cttcaccagagcatgggtatcaactttgacaagtatggtgacattcccgtcgaggctact
ggtcgcgatgtgcccgagcctgtcactaccttcacctctcctcctatcgatgctcacctt
ctcgaaaacatcaagctcgctcgctacaccaaccccacccctgttcagaagtactcgatc
cccatcattaagcttggtcgtgacttgatgggctgtgcccagaccggttctggtaagacg
ggtggtttcctcttccccattctctcggctctcttcacccacggccctcctcctccctct
gccgccgagatggctcagggcggttacaatcgcagaaaggcctaccccagcaccctcatc
ctggctcccactcgcgagcttgtctcgcagattcacgacgaggcccgcaagttcacttac
cgctcgtgggtgaagcctgcagtcgtctacggtggcgccgacattgtcactcagctccgt
cagatcgaacgtggatgtgaccttctctctgctacccccggtcgtctcgtcgacctgatg
gagcgtggtcgaatcagccttagcaacgtccgtttcctggtcctcgacgaggctgaccgc
atgctagacatgggtttcgagcctcagattcgacgcatcgtcgaaggcgaggacatgcct
ggtgtcatggatcgccagacgctcatgttctcagccaccttcccccgcgacatccagctg
ctcgctaaggatttcctcaaggagtacgtcttcttgtccgttggccgtgtcggttccact
tcggagaacatcacccagaagatcgaatacgtcgaagatgatgacaagcgctcggttctc
cttgacgtcctcgcctcgatgcccagcggtggtctcactcttatctttgtcgaaaccaag
cgcatggccgacatgctcagcgatttcctcctccgctccaagatcggcgccacctcgatc
cacggtgaccgtacccagcgcgagcgcgagcgtgctctcgagctcttcagatcgggcaag
acgcccatcatggtcgccaccgccgtcgccgcccgcggtctcgatattcccaacgttacc
cacgtcgtcaactacgatcttccctcggacgtcgacgactatgttcaccgcatcggtcgt
accggtcgtgccggtaacgtaggtcacgccaccgccttcttcaaccgaggcaacaagaac
atcgtgcgcgatcttatcgaattgctcaaggaggccaaccaggaggtgcctcagtggctc
gaggccgttgcccgcgagagcatgtttggtgctggtggcggaagccgtggtggtcgcggt
cgcggccgtggtcgcggaggtgcctcttcgtttggcaaccgtgacgcccgtaccatgaac
ggaccctcgtccggcggcggacgtggtttcggtggtggctacggtggcggtatgggcggt
ggtctcggcggcagctacggcgccggcgctgctgcctacggtggccctccccctgcttcc
aacggcggcagctacggcggcaactcgtcatggtggtaa
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