Ustilago maydis: UMAG_04563
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Entry
UMAG_04563 CDS
T01021
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
uma
Ustilago maydis
Pathway
uma03013
Nucleocytoplasmic transport
uma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UMAG_04563
09122 Translation
03013 Nucleocytoplasmic transport
UMAG_04563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_04563
03041 Spliceosome [BR:
uma03041
]
UMAG_04563
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
UMAG_04563
Spliceosome [BR:
uma03041
]
Complex C
Other components
EJC/TREX
UMAG_04563
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
UMAG_04563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
23564711
NCBI-ProteinID:
XP_011390879
UniProt:
A0A0D1DT20
LinkDB
All DBs
Position
13:complement(226799..229522)
Genome browser
AA seq
907 aa
AA seq
DB search
MSHSEVAAERLRQCLAELIPSLLASLSDMRRSNPGQVLLPFAHVLDALKPLAATQNAREA
FGLATDLSTVDKDGSEVRLRNLCLELSNNELRKVVLEDPSGLVAGQAEDGAEGVSHSQLT
SSLDRLDVILVLSLQDLVDPTLPLSLVEELIESQPISTCSRLFGYTESRVKPLTVDLHPT
RGKGLVLLRTCNELLRRLSKPSQEHTVFAGRILSLLAKVFPLGERSGVNLRGEFNVENKT
SIEEKVEDAKPEADDEADRDERDKVFKVDYEFYEVFWKVQRFFSNPPTLMGAQDSSRPST
RSATPAELVEADRGLSDDDPAPDGAKGAMAELRISTAKILKLFSAVNKREKELAGAASTE
ESKSNGTKGNAPNAPSVSATPLSSKGPRTGGVANTGYIVGKSIGCKRDEPPRKRARPDIV
NGIKMDSPDAIQDMAESIAEEEEEEEQAASGAARGHFFPKYLTGRKLFEYEIRNTSFRKH
ILVQYFVLFQYLLSYTPAAKESWKDWKNKTLQALFTLEEADERWIRSTWREIQALMRDIQ
PDGRLFLDSVLEVLRREANWIRWKTESCPSIEKPPLSPEQLAQFASARALLLRKAEPYPH
KLGTAALSELWEDGLRPPVAGTRRAENEMGEYVTVATDGLEELEFAPAAPSLEHYNKSIQ
REKMKLDLRKKQLGIDPAVSETNLSKEDQSKLDKDDRVQATIETMQSLAWRALRVASRDN
LHLFGKPDRPENIERLLQAMEEERNPKPNAVTPSAQPTSDESDTRSGQEANGDTSKGKEA
EAEAKTDAGIPATVAEPVKEEGLEMEMEPAQQDTANAQTDQAKSKDEGEAATDLSSVPVS
ITAVPTTLPVLQTVTEEITVVTDRERDLVEVMVKTEEEETPEKQANLTSGREAPADQEQD
VDMSEAV
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgagccacagtgaagtggctgccgagaggctccgccagtgcttggcagagctcattccg
tcgttgctcgcgagcctctcagacatgcgacgttcaaatccgggacaggttttacttccc
ttcgcccacgttctcgacgctctcaagccactagctgccacacaaaacgctcgggaggcc
ttcggcctagcaacagatctctcgactgtcgataaagacgggtcggaagtgcggctacgc
aacttgtgcctggagcttagcaacaatgagctccgcaaagtggttctggaagacccatcg
ggcttggttgctggccaagctgaggacggcgccgagggcgtctcccacagccagctcaca
tcatctcttgatcgtctcgatgttatccttgtgctctcgctgcaagatctggtcgaccct
acattgcctctgtctctggtagaagagctcatcgagagccaacccatctcgacctgctca
cgcctatttggatacacagagtctcgcgtcaagcccctcacggtcgacttgcatccgaca
agaggaaaaggcttagtattactgcgaacatgcaacgagctgcttagaaggctctccaaa
ccatcccaagagcacactgtattcgcaggccgtatcctgagcttgctagccaaggtattt
ccactcggcgaaaggagtggtgttaacctgcgaggagagttcaatgttgaaaacaagacg
tcgatcgaggagaaagtagaggatgccaaaccagaagccgatgacgaggctgacagagat
gaaagggataaggtttttaaggtggattacgagttctacgaagtgttctggaaagtccag
cgcttcttttccaatccgccaacgctcatgggcgctcaggactcttcgcggccatccaca
agaagtgctacgcctgctgaattggtcgaagcagatcgcggtctctcagacgacgaccct
gctcctgatggggccaagggtgctatggcagagctacgaatcagcactgcgaagattctc
aagctcttcagcgccgtcaacaaacgtgaaaaggaacttgcaggtgcagcgagcacggaa
gagtccaaatctaatgggacaaaggggaatgctccgaatgctccatctgttagtgctacg
ccgctgtcaagcaaggggccgagaactggcggtgtggcaaacacaggctacatcgtcggc
aagtcaataggatgtaaaagagacgaaccgccaaggaaacgtgctcgacccgatattgtc
aacggcatcaaaatggatagtcctgatgcaattcaagacatggctgaatcgattgctgaa
gaggaagaggaagaggaacaggcggcgtcaggagccgcaagaggccatttcttccccaag
tatctgacaggacgtaagctgttcgaatacgaaatccgaaacacgtcgttccgcaagcac
atcttggttcagtactttgtgcttttccaatatcttctctcctacaccccagcagccaag
gaaagctggaaggattggaagaacaagacgctgcaagcgctattcaccctcgaggaagcc
gatgaacgctggatcaggtctacgtggagggagattcaggcgctgatgcgcgacatccag
ccagatggacggctatttctcgattcggttctcgaagtgcttagaagggaggcaaactgg
atacgatggaaaacggaatcctgcccttcaatcgaaaagccgcctctgtcgcctgagcaa
ctggcgcaatttgcatcggcaagggcattgctactgcgcaaagccgagccctatccacac
aaactcgggaccgcggcgttgtccgaactgtgggaagacggtctgcgtccacccgtcgca
ggtacacggcgtgcagaaaatgagatgggcgaatatgtgactgtggcaaccgatgggctt
gaagagctcgagtttgcaccagcagcgcccagcctagagcactacaacaagtcgatccaa
cgcgaaaagatgaagctcgatctgcgcaagaagcagctcggcattgatccagcggtcagc
gagaccaatctgagcaaagaggatcagagtaaactggacaaggacgaccgagtacaagca
acgatcgagactatgcagagtctggcgtggagggcgttacgtgtagcaagtcgtgacaac
ttgcatctgtttggcaagccagatcgaccggaaaacatcgagagactactccaagcgatg
gaagaggagcgcaacccgaagccaaacgcggttacaccttctgcgcagccgacttcagat
gaaagtgatacaagaagtgggcaggaagctaatggggacacgagtaagggcaaggaagcg
gaagcggaagcgaaaacggatgcaggtataccagcgactgttgcggagcctgtgaaggag
gaaggcttggagatggagatggagcctgctcaacaagacactgcaaatgcgcaaaccgac
caagcgaagagcaaagacgagggagaagcagcaaccgacctgtcgagcgttccggtctcg
attactgcagtaccgacaacactgccggtcttgcagacggtaacagaagagataacggtt
gtcacagacagggagagggacttagtagaagtcatggtaaagacagaggaagaggagaca
cccgaaaagcaagccaatctcacttccggacgggaggcgcctgcggatcaggaacaggac
gtcgacatgtcagaagctgtttaa
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