Ustilago maydis: UMAG_10655
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Entry
UMAG_10655 CDS
T01021
Name
(RefSeq) putative DExD/H-box ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
uma
Ustilago maydis
Pathway
uma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UMAG_10655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_10655
03036 Chromosome and associated proteins [BR:
uma03036
]
UMAG_10655
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UMAG_10655
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
UMAG_10655
mRNA degradation factors
5'-3' decay
Decapping complex
UMAG_10655
Chromosome and associated proteins [BR:
uma03036
]
Eukaryotic type
Gene silencing
piRNA pathway
UMAG_10655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
23566655
NCBI-ProteinID:
XP_011389806
UniProt:
A0A0D1CQ54
LinkDB
All DBs
Position
8:complement(633341..634807)
Genome browser
AA seq
488 aa
AA seq
DB search
MSASGPAPGQSEAAWKQQITSRLSKDERPQTEDVLNTKGNEFEDYFLKRELLMGIFEAGF
ERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEKLNTKKNKIQAVLLVPTREL
ALQTSQVAKTLGKHLGVEVMVTTGGTTLRDDILRLGQTVHLLVGTPGRILDLAGKGVADL
SQCTTFVMDEADKLLSPEFTPVMEQLLSFLPKERQVMLFSATFPLIVKDFKDRNMVKPYE
INLMDELTLRGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL
GYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCSDLLTRGIDIQAVNVVINFDFPKNAET
YLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIQPIPSNIDKRLYVAPSLIQE
AEGNNQNGNKQEGRPVIPPGQQAMHAAAIPLNQNFTNTVPHRHRSGGGGGRGGGGGGRGG
PHGGVPAQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatcaggaccagcgccaggccagtccgaagccgcttggaagcagcagattacc
tcaaggctttccaaagatgagcgtcctcagaccgaagatgtgctcaacacaaaaggcaac
gagttcgaagattactttctcaaacgtgaactccttatgggcatctttgaagccggtttc
gagcgcccctcccccatccaagaagaggccatcccgatcgcactcaccggtcgcgatatc
ctggcgcgtgccaagaacggtacgggcaagacagctgcctatgtcatcccttcgctcgaa
aagctcaacaccaagaagaacaaaattcaggccgtccttctggtgcccacccgtgagctt
gctctccaaacaagtcaagtcgcaaagacgctcggaaagcacctcggcgtcgaagtcatg
gtcaccaccggaggtaccacgcttcgcgacgatattctccgtctcggacagacggttcac
ctgcttgttggtactcccggtcgaatcctcgacctggccggcaagggcgtcgccgatctc
agtcaatgtaccactttcgtcatggatgaagccgataagctcctgtcacccgaattcacc
ccagtcatggagcagctgctcagctttctccccaaggagaggcaagtcatgctcttctcg
gccacgttcccactcatcgtcaaggatttcaaggaccgcaacatggtcaagccctacgag
atcaacctcatggacgagctcacgctgcgcggtgttacacagtactatgcctttgtcgaa
gaaagacagaaagtgcattgtctgaacactctcttctccaagctccagatcaaccagtcg
attatcttttgcaactcgaccaaccgtgtcgaattgctagccaagaagatcaccgagctt
ggctatagctgcttctactcgcacgcaaagatgctccaagcgcaccgaaacagagtcttc
cacgatttccgcaacggtgcctgccgtaacctggtctgctccgacttgcttacccgaggt
atcgacatccaggccgtcaacgtggttatcaactttgatttccccaagaacgccgaaacc
tatcttcaccgaatcggtcgttccggccgtttcggccacctcggtctcgccatcaacctc
atcacgtacgaagatcgattcaatctctaccgcatcgagcaggagctgggtaccgagatc
cagcccattcccagcaacattgacaagaggttgtatgttgcgccttcgctcattcaggag
gctgagggcaacaaccagaatggcaacaagcaggagggaaggccagtgattccgccaggt
cagcaggccatgcatgcggctgctattccgctgaatcaaaactttactaacaccgtcccg
cacaggcaccggagtggaggcggcggtggtcggggtggaggaggaggagggcggggcggg
ccgcacggtggtgtacctgcgcaatag
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