Usitatibacter palustris: DSM104440_03594
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Entry
DSM104440_03594 CDS
T06995
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
upl
Usitatibacter palustris
Pathway
upl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM104440_03594 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_03594 (ligD)
Enzymes [BR:
upl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM104440_03594 (ligD)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM104440_03594 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QJR16758
UniProt:
A0A6M4HDF0
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All DBs
Position
complement(3727862..3730537)
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AA seq
891 aa
AA seq
DB search
MAKDDLREYSAKRTFTATPEPGPELAKDRAGPLLFVVQQHAATRLHYDFRLECDGVLMSW
AVPKGPSLDRAEKRLAVRTENHPYGYAAFEGIIPKGQYGAGEVIVWDCGVYSPDEDAKGK
KGHWYHDREEAERLIREGMAKGKLSITLRGEKLKGSFALVKTKEDKAWLMIKHQDRFVTD
EDVTEKNRSVITGIAVPELKVVSPQRIPASRLVPTGPIVAMPKIEPMLAETGEKVFNKAD
WMWEPKLDGYRVLAFIEESGVRLRSRRGIDYAEKFPKLAAELAKQAVNGMVLDGEVVAFD
ASGRPSFGAMQDADANTPVVFCAFDLLYFEGVDLRKSTYRDRRRYLAQCLLPSPLVQLVH
AADDGVALNTAAMASGFEGVMGKRKDSTYEAGKRSSSWIKVKPTQTADFVIGGYTKGKGS
RSGFGSLLLGYWKGRKFHFASHVGSGFDEKTLKKVRALLDPLARKTRPFEEEPELNGEAV
WVEPKLVAEVNFQNWTDDGALRAPVFLRLRDDVDAKKVTRVETRTATAPEAAAGGDPTIA
AVLAQLEAKKTALSLVVGKQVVKLTNLDRVYWPADPSVDQPALTKRDLIRYFAQVSPYIL
THLADRPLTMIRMPDGIKGQRFFQKHWEQERPEFVDTITVYSGSKDESQEYLVCNNLPTL
LWLAQSGTLEFHIWHSRSKPGPDSVTKDTNFAESEASMDASILNYPDYVVFDLDPYIYSG
KEGKGEEPELNTVAFEKGKEVAFWLRELLQGMSLNPIVKTSGKTGLHVFVPIRRTIDFDA
ARHVSELVGRHLMRGHPKDITLEWSIPKRTGKIFMDYNMNVRGKTLNVAYSPRGAPGAPV
SMPLTWEELATAHPLDFRMTNAAERLAETGDRWQDALTIKQSLERALKGGK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggatgacctgcgcgaatactccgccaagcgcaccttcaccgcaacgcccgag
cccggacccgagctcgcgaaggaccgcgccggtccgttgctgtttgtcgtgcagcagcat
gcggcgacacgcttgcactacgacttccgcctcgagtgcgatggcgtcctcatgtcctgg
gcggtgccgaaggggccgtcgctcgaccgcgccgagaagcggctcgcggtgcggactgaa
aatcatccgtatgggtatgcggcatttgaagggatcattcccaaggggcagtacggcgcg
ggcgaagtgatcgtgtgggactgcggcgtctattcgcccgacgaggacgcgaagggcaag
aagggccactggtatcacgaccgcgaggaggccgagcgcctcatccgcgaggggatggcc
aagggcaagctcagcattacgctgcgcggcgagaagctgaagggttccttcgcgctcgtg
aagacgaaggaggacaaggcctggctgatgatcaagcaccaggatcggtttgtgacggac
gaggacgtcaccgagaagaaccggtcggtgatcaccgggatcgcggtgcccgagctgaag
gtggtgagcccgcagcgcattcccgcttcgcgcctcgtgccgaccggtccgattgtcgcg
atgcccaagatcgagccgatgctcgcggagaccggcgaaaaggtcttcaacaaggccgac
tggatgtgggagccgaagctcgacggctaccgcgtgctcgcgttcatcgaggagtccggc
gtgcggctgcgctcgcgccgcggcatcgactatgcggagaaatttccgaagcttgccgcg
gagctcgccaagcaggcggtcaacggcatggtgctcgacggcgaagtggtcgccttcgac
gcgtcgggccgtccctccttcggcgcgatgcaggatgccgacgcgaatacgccggtcgtc
ttctgcgcattcgatctcctctatttcgagggcgtggatttacgcaagagcacgtatcgc
gatcggcgccgctacctcgcccagtgcctgctcccgtcgccgctcgtgcagctcgtgcac
gcggccgacgacggcgtcgcgctcaacaccgccgcgatggcgagcgggttcgaaggcgtg
atgggcaaacgcaaggacagtacgtacgaggcgggcaagcgttcctcgtcgtggatcaag
gtgaagcccacgcagaccgcggacttcgtgatcggtggttatacaaagggaaagggctcg
cgctccggattcggctcgctgctgctgggctactggaagggaaggaagtttcacttcgcc
tcgcacgtgggttcgggcttcgacgagaagacgttgaagaaggtgagggcgctgctcgat
ccgctcgcgcggaagactcgtcccttcgaggaagagcccgagttgaatggcgaggccgtg
tgggtcgagccgaagctcgtcgcggaggtgaacttccagaactggacggatgacggtgcg
ttgcgtgcgcccgtgttcctgcgcctgcgtgatgatgtcgatgcgaagaaggtcactcgc
gtcgagacgcgaaccgccacggcacccgaggccgccgcaggtggcgaccccacgatcgcc
gccgtccttgcgcagctcgaagcaaagaagaccgctctctcgctcgtggtgggcaagcag
gtcgtgaagctcacgaacctcgatcgcgtgtactggcccgccgatccgtccgtcgaccag
ccggccctcaccaagcgcgacctcattcgctatttcgcgcaggtctcgccttatatcctc
acgcacctcgccgaccggccgctcacgatgatccgcatgcccgacggcatcaaggggcag
cgcttcttccagaagcactgggagcaggagcgccccgagttcgtcgatacgatcaccgtg
tattcgggcagcaaggacgagagccaggagtacctggtctgcaacaacctgccgacgctg
ctgtggctcgcgcaatcgggaacgctcgagttccacatctggcattcgcgctcgaagccc
ggacccgattccgtgaccaaggacacgaacttcgccgaatccgaagcctcgatggacgcc
tcgatcctcaactatcccgactacgtggtcttcgacctcgatccgtacatctactcgggc
aaggaaggcaagggcgaggagcccgagctcaacaccgtggccttcgagaagggcaaggaa
gtcgcgttctggttgcgcgaactgctccagggcatgtcgctcaatccgatcgtgaagacc
tcgggcaagaccggcttgcatgtcttcgtgcccattcgtcgaacgatcgattttgacgcg
gcgcgccacgtttcggaattggtggggcgccacctgatgcgcggccatccgaaggacatc
acgctcgagtggagcatccccaagcgcaccggcaagatcttcatggactacaacatgaac
gtgcgcggcaagaccttgaacgtcgcgtactcgccgcgcggcgcacccggcgcaccggtc
tcgatgcccctcacctgggaagagctcgccaccgcccacccgctcgacttccgcatgacc
aacgccgccgagcgcctcgccgaaaccggcgaccgctggcaggacgcgttgacgatcaaa
cagagcctggagcgcgcgctgaagggtgggaagtag
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