Ureaplasma parvum serovar 3 SV3F4: UP3_c0019
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Entry
UP3_c0019 CDS
T03673
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
upr
Ureaplasma parvum serovar 3 SV3F4
Pathway
upr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
upr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UP3_c0019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upr03400
]
UP3_c0019
DNA repair and recombination proteins [BR:
upr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UP3_c0019
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UP3_c0019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
GreA_GreB_N
Kinesin
GerPC
AAA_30
Helicase_RecD
AAA_5
AAA_22
DUF2785
Motif
Other DBs
NCBI-ProteinID:
BAO73326
LinkDB
All DBs
Position
complement(19351..21351)
Genome browser
AA seq
666 aa
AA seq
DB search
MDDFKKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQL
KTLVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAE
IEMMRLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQ
LGYERKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKE
QRFILRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIV
EFGFCSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDR
SRKQTLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRP
TGLLDPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAY
LHNELKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSL
IQIIGRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHE
DLSGHDYKQNAELYAAKASKNEYNQKIKELKKKMEEAAKKREYEVAAQYRDMIVELEAIK
QSVKSK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttaaaaaatttgaattaataagcgattataaaccagctggtgaccaacaa
aaggcaattgatgaaatggttaataatattaatcaaggtattcaacgacaagtattatta
ggggcaacaggaacaggaaaaacatttagtgtggctaatgtaattgcaaaaacccaatta
aagactttagttcttgctcataataaaacattagctgcacaattatttgctgaacttaaa
gaaatgtttcctcataataaagttgaatattttgtttcatattttgattattatcaacca
gaagcttataaacctataactgatacttatattgaaaaagattcagtaacaaatgcagaa
attgagatgatgcgtttatcaactattaattcattggctacaagaaatgatgtcattgtt
gttgcttctgttgcatgtatttatgcatctgtttctcctatagaatttactaaaaagaat
ttatatttacatgttggtgaattaatcgaatttgaacaaattaaatataaattagttcaa
ttaggttatgaacgaaaagattatgatttagtgccaggaacatttaggattcgtggtgat
ttaattgaaattatgtctggatatagtgataaatttaaaataagaatatcaatgtttgga
aatgaagttgaatcaattgatctttgcgatccaattactaataatattatttctaaagaa
caaaggtttattttacgaagtgcaagtgaatatatttttgatgattcgcgtttagcaata
gcgattgaaaatattaaaaatgaactagatgaacgagttaaattttttctaaaaaacaat
caattaattgaggcgcaacggattgagcaacgaactaaacaagatcttgaaagtattgta
gagtttggtttttgtagtggagttgaaaattattatcgtcatcttgaacatcgtgaacct
tttcaaacaccatggacaatttttgattttttttcatataacaatcaagattgattatta
attgtagatgaatcacatatttcattaccacaagtgaaagggatgcataatacagaccgt
agtcgtaaacaaacattagttgaatacggatttcgtttacctagcgctttagataatcgg
cctttaaattatgatgaatttaataaaaaactttccaaaacgatttatgtttctgccaca
ccaaacgatgaagaaattgcgttatcagataatcatatagttagtcaaattgttcgtcct
acaggattattagatccaattattgaaattagaaaaacagaacaccaaattgatgattta
attaatgaattgatgcttttaaaaaacaagaatcaacgagcatttattactgttatgaca
attagaatggctgaggatttaacaaattatttaaataatacaaaaattaaagctgcttat
ttacataatgaattaaaaacactagagcgtagtgttattatcaataaattaagaaaagga
atttatgattgtgttgttggaattaatcttttaagagaaggattagatgttccagaagtt
gcaggtgtttttatttttgatgctgataaacctggtttttttagaagtgataaatcttta
attcaaattattggacgtgcagcacgtaatgctgatggtaaagtaattatgtatgctgat
gtaataacacaagccatgcaaaccgcaatcaatgaaacaaaacgacgacgtgaaattcaa
ttagcttttaatttaaaacataatattatccctaaaacaattattaaaccaattcacgaa
gatttaagtggccatgattataaacaaaatgcggaattatatgctgcaaaagcttcaaaa
aacgagtacaatcaaaaaatcaaagaattaaagaaaaaaatggaagaagctgcaaaaaaa
cgtgaatatgaagttgctgctcaatatcgcgatatgattgttgaattagaagccattaag
caaagtgtaaaaagcaaataa
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