Uruburuella suis: LVJ78_05685
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Entry
LVJ78_05685 CDS
T08067
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
usu
Uruburuella suis
Pathway
usu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
usu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVJ78_05685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
usu03400
]
LVJ78_05685 (mfd)
Enzymes [BR:
usu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ78_05685 (mfd)
DNA repair and recombination proteins [BR:
usu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVJ78_05685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
UOO80486
LinkDB
All DBs
Position
complement(1278736..1282197)
Genome browser
AA seq
1153 aa
AA seq
DB search
MKPILPAPAQKAVWPGLSRGSLPLFLTENLPAGTLKVVFTQDVEQALRLQTAWQFFRPQE
HAVFLPDWETLPYERFSPHQDLVSERLSALWQLKSGQADVLFVPVSTAMQKLAPLPFMAA
RTFWLKAGQTLNIEALRESLVEAGYSSVTNVVATGEFAVRGGILDIFPMGSEAPYRLDMF
DDEIDSIKTFDPDSQRTLAPVSEIRLLPAHEFPTDADAQKIFRARFREEIEANPADAAVY
KAVSKGHFGAGVEYYLPLFFEEECATLFDYIGKNAVAVCIGDVHAEAARFWGDVKTRFAM
AQGDETYPPLPPQHLYLNDSEFSGRLKPYPQVLPEFSSPTHTLPDVAVNRQAEMPLQALQ
DFQTAFNGRILLCAESLGRRETMLGFMQQHGLKPQTVAGWQAFLSSDAPLCLTVTPLAYG
FQLADATLPASACGKGLGNGLAAADMPISNIAVITESDLYQYVARSRNKARRKHNAVSDG
LLRDLAEINIGDPVVHEEHGIGRYMGLVNMDLGEGGNEMMLLEYADEAQLYVPVSQLHLI
SRYAGHAADNVHLHKLGSGAWGKAKRRAAEKARDTAAELLNLYAQRAAQQGHKFDLNEQD
YQAFSDGFGYEETEDQAAAIGAVLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGG
KQVCVLAPTTLLVEQHAQNFADRFADFPVKVAQLSRFNTGKATQQTLKGMADGTVDIVIG
THKLVQPDITFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEG
LRDFSLITTAPSRRLAVKTFVKPFSEASIREAMLRELKRGGQVFFLHNEVDTIENMHERL
AELLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRAD
KFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADDLGAGFTLAMQDLE
IRGAGEILGEGQSGEMMQVGFSLYTEMLKQAVRELKKGRVPDLDAPLGVTTDIKLHSPAL
LPDGYCPDIHERLVLYKRLATCETEQQINAVHEELVDRFGLPEQPVKTLLESHRLRLAAK
ELGIAAIDATAEAATFTFGKGHSIDPAEIILLMQTNKNYRLAGPDKLRVNAVMEDVETRI
QTVKAVLKKLQGK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccattcttcccgcccctgcccaaaaagccgtttggcccggcctttcgcgcggc
agcctgccgctttttctcaccgaaaatctgccggccggcacgcttaaagtggtgttcacc
caagatgtagagcaagctttgcgcctgcaaacggcatggcagtttttccgcccgcaagag
catgccgtgtttctgcccgactgggaaacgctgccttacgagcgcttttcgccgcatcag
gatttggtgtcggagcggctctcggccttgtggcaattgaaaagcggccaggccgatgtg
ttgtttgttcccgtgtctaccgccatgcagaagctcgcgcccctgccttttatggcggcg
cgcacgttttggctcaaagcggggcaaacgctcaatatcgaggctttgcgcgaaagcctg
gtggaagcgggctacagcagcgtcaccaatgtggtggccacgggcgaatttgcggtgcgc
ggcggcattttggatattttcccgatgggcagcgaagcgccttatcggctcgatatgttt
gacgatgaaatcgacagcatcaaaaccttcgaccccgacagccagcgcacgctcgcgccg
gtgagcgaaatccgcctgctgcctgcgcacgaatttcccaccgatgcagatgcgcaaaaa
atcttccgcgcgcgctttcgcgaagaaatcgaagccaaccccgccgatgccgccgtgtat
aaagcggtgagcaaagggcatttcggcgcgggggtggaatattatctgccgcttttcttt
gaagaagaatgcgccacgctgtttgactatatcggcaaaaacgcggtagccgtgtgcatc
ggcgatgtgcacgccgaagccgcgcgcttttggggcgatgtgaaaacccgctttgccatg
gcgcaaggcgatgaaacctacccgcctttaccgccacagcatctgtatctaaacgacagc
gaattctcaggccgtctgaaaccttatccgcaagtgttgcccgaattcagcagcccgacg
cacaccttgcccgatgtggcggtaaaccgccaggcggaaatgcctttgcaggcgctgcaa
gattttcagacggcctttaacggcagaatattattgtgcgccgaaagcctgggccggcgc
gaaaccatgctcggttttatgcagcagcacggcttgaagccgcaaaccgtggccggctgg
caggcatttttaagcagcgatgcgccgctttgcctcaccgttaccccgctggcctacggc
tttcaattggcagatgccacgcttcccgcctccgcttgcgggaaaggcttagggaacggg
cttgcggcagccgatatgccaatcagcaatatcgccgtgattaccgaatctgatctttat
caatatgttgcccgcagccgcaacaaagcgcggcgcaaacacaatgccgtttcagacggc
ctgttgcgcgatttggccgaaatcaatatcggcgacccggtggtgcacgaagagcacggc
atcggccgctatatgggcttggtgaacatggatttaggcgaaggcggcaacgaaatgatg
ttgctcgaatatgccgatgaagcgcaattatatgtgcccgtgtcgcagctgcatctgatt
agccgctatgccggccacgccgccgacaatgtgcacctgcacaaactcggcagcggcgca
tggggcaaagccaagcgccgcgccgccgaaaaagcgcgcgacaccgccgccgaattgttg
aatttatatgcccaacgcgccgcccaacaaggtcataaattcgatttaaacgagcaggat
tatcaggctttttcagacggcttcggctatgaagaaactgaagaccaagccgccgccatc
ggcgcggtgctcaaagacctcacccaaggcaagccgatggaccggctcgtgtgcggcgat
gtgggcttcggcaaaaccgaagtggccttgcgcgcggcctttgtggcggtgatgggcggc
aaacaagtgtgcgtgctcgcgcccaccaccttgctggtggagcagcatgcgcaaaacttc
gccgaccgcttcgccgactttccggtgaaagtggcgcagctttcccgtttcaacaccggc
aaagccacccagcaaacgctcaaaggcatggccgatggcacggtggatatcgtaatcggc
acgcataaattggtgcagcccgacatcacttttaaaaacctcggcctcgtgattatcgat
gaagaacatcgcttcggcgtgcgccaaaaagagcagctcaagcgcctgcgcgccaatgtg
gatattctcactctcaccgccacgccgattccgcgcacgctgagtatggcgctcgaaggc
ctgcgcgatttctcgcttatcaccaccgcacccagccgccgcctggccgtgaaaaccttt
gtgaagcctttcagcgaagccagcatccgcgaagccatgctgcgcgagctcaagcgcggc
ggccaagtgtttttcctgcacaacgaagtagacaccatcgaaaacatgcacgagcgcttg
gccgaattgctgcccgaagcccgcatcggcgtggcgcatggccaattgcgcgaacgcgag
ctcgagcaagtgatgcgcgactttttgcaacagcgttttaatgtgctgctgtgttccacc
attatcgaaaccggcatcgacattcccaatgccaacaccatcatcatcaaccgcgccgat
aaattcggcctagcgcagctgcaccaattgcgcggacgcgtcggccgcagccaccatcag
gcttatgcctatctgctcacgcccgaatacatcaccaaagatgccgaaaaacgcctcgat
gccattgccgccgccgatgatttgggcgccggcttcacgctggccatgcaagacctcgaa
atccgcggcgccggcgaaattctcggcgaaggccaaagcggcgaaatgatgcaggtcggc
ttcagcctctacaccgaaatgctcaaacaagccgtgcgcgagctcaaaaaaggccgcgtg
cccgacctcgatgcgccgctgggcgtgaccaccgacatcaaactgcacagccccgccctt
ttgcccgacggctattgccccgacatccacgagcgcttggtgctctacaagcgcctggcc
acttgcgaaaccgagcagcaaatcaacgccgtgcacgaagagctggtcgaccgcttcggc
ctgcccgagcagccggtgaaaaccctgctcgaaagccaccgcctgcgcctggccgccaaa
gagctgggcatcgccgccatcgacgctaccgccgaagccgccaccttcaccttcggcaaa
ggccacagcatcgaccccgccgaaattattctgctgatgcaaaccaacaaaaactaccgc
ctcgccgggccggataaattgcgggtaaacgcggtgatggaagatgtggaaacacgcatt
caaacggtgaaggcggtgttgaagaaattgcaggggaagtga
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