Variovorax sp. PAMC 28711: AX767_18725
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Entry
AX767_18725 CDS
T04325
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AX767_18725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_18725
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX767_18725
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AX767_18725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMM26156
UniProt:
A0A126ZGR9
LinkDB
All DBs
Position
complement(3885191..3888673)
Genome browser
AA seq
1160 aa
AA seq
DB search
MDLPPLTAGKRFTLPRPPLSADALLLSQLATREKAMGHATAVFTADANDAQRLIDEIAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPS
FLAGYTFHFKTKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSLVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWREMLDGDPTK
SRIYKDMGNGVATAGIEYYLPLFFEETATVFDYLGTETTVVLHGDLEPAFQHFWQDTGER
YRLVRGDPERPALPPETLFLNAEQFYQRAKPLAQLAIRGDVATDTPYAEFDKLPPFAVVR
GADDPLTGLKAHIRATPHRVLVIAESNGRRESLLDFLRASGVSPPAFDSLAEFEASPDEK
IGIATAALASGFAWREQGIDFVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVG
DPVVHSAHGIGRYRGLIHMDLGQGKDAEGKPLLQEMLHLEYADKATLYVPVSQLHLISRY
TGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRALRQGHAFRYSAADYEV
FANDFGFEETADQKAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITGGKQV
ALLAPTTLLAEQHYQTLVDRFAKWPVKVAEVSRFRSGKEVSTALKGLADGNVDIVVGTHK
LLSESTKFANLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRD
LSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEI
LPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFG
LAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEI
RGAGEVLGENQSGNMMEIGFQLYNEMLSEAVRSLKEGKEPDLLSPLHVTTEINLHAPALL
PDNYCGDVHLRLSFYKKLATAKTSDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARP
YGVVKVDAAPGVIHITFKKDPPVDSMAIIHLIQKNKHIKLAGNEKLRIERELKEPKERAQ
MVRDVLRSLGQPKVQEPVAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccctctcacggcgggcaagcgattcacgctgccgcgcccgcccctgtcg
gccgatgcactcctgctctcgcaactcgccacacgcgagaaggccatggggcacgccacg
gcggtgttcacggccgatgcgaacgacgcgcaacggcttatcgacgagatcgcgttcttc
gcgccggagttgcgctgcgccctcttccccgattgggaaacgctgccgtacgacagcttt
tcgccgcaccaggacctgatcagcgagcggctcgccacgctctggcgcatcagccagaaa
gaagccgacgtggtgctggtgccggcgaccactgcgctctaccggctggcaccgccgtcg
ttccttgcgggctacaccttccacttcaagacgaagcagaagctggaggagtccaagctc
aaggcgcagctcacgctggccggctacagccatgtgacgcaggtggtgagccccggcgag
tacgcggtgcgcggcgggctgatcgacctgttcccgatggggtcgctggtgccgttccgc
gttgacctgttcgacgacgagatcgattcgatccgcaccttcgaccccgatacccagcgc
agcctgtacccggtgcccgaagtgcgactgctgcccggccgcgagttcccgatggacgac
gacgcccgtgcgcgttttcgcagccgctggcgcgagatgctcgacggcgatccgaccaag
agccgcatctacaaggacatgggcaacggcgtggcgaccgcgggcatcgagtactacctg
ccgcttttcttcgaagagaccgccacggtgttcgactacctcgggaccgagacgaccgtc
gtgctgcatggcgacctcgaaccggcgttccagcatttctggcaggacacgggcgagcgc
taccggctggtgcgcggcgatccggagcggcccgcgctgccgcccgaaacgctgttcctg
aacgccgagcagttctaccagcgcgccaagccgctggcgcagctggccatccgcggcgac
gtcgcaaccgacacgccctacgccgaattcgacaaattgccgcccttcgcggtggtgcgc
ggcgcagacgatccgctcaccggcctcaaggcgcacatccgcgccacgccacaccgcgtc
ctggtcatcgccgagagcaacggccggcgcgagagtctgctggacttcctgcgcgccagc
ggtgtgagtccgccggccttcgactcgctcgccgaattcgaagcctcgcccgacgagaag
atcggcatcgccaccgccgcgctggcctcgggcttcgcgtggcgcgaacagggcatcgac
ttcgtcaccgaaaccgagctcttcgcgactgcgccgaccacgcgccgccgcaacaagaag
caggaacaggtcagcgacgttgaagcgctgatcaaggacctgtcggaactgaacgtcggc
gatccggtggtgcacagcgcgcacggtatcggccgttaccgcggcctgatccacatggac
ctcggccagggcaaggacgccgaaggcaagccgttgctgcaggaaatgctgcacctcgag
tacgccgacaaggccacgctctacgtgccggtgagccagctgcacctcatcagccgctac
accggcgtgagcgccgacgaggcgccgctgcacaaactgggctcgggccagtgggaaaag
gccaagcgaaaggcggcagagcaggtgcgcgattcggctgcagagttgctcaacatctat
gcgcgccgcgcactgcgccagggtcatgcgtttcgctattcggccgccgactacgaagtg
ttcgccaacgacttcggcttcgaggaaacggccgaccagaaggccgcgatccacgccgtg
atccaggacatgatttcgccgcaaccgatggaccgcctcgtgtgcggcgacgtggggttc
ggcaagaccgaagtcgcgttgcgcgcggcgttcatcgcgatcaccggcggcaagcaggtc
gcattgctcgcgccgaccacgctgctcgcggagcagcactaccagacgctggtcgaccgc
ttcgccaagtggccggtcaaggtggcggaggtgtcgcgcttccgctctggcaaggaagtg
agcaccgcgctcaagggcctggccgacggcaacgtcgacatcgtcgtcggcacgcacaag
ctgctgagcgaatcgacgaagttcgcgaacctgggcctgctcatcatcgacgaggagcac
cgcttcggcgtgcgccacaaggagcagatgaaggcgttgcgcgccgaggtcgacgtgctc
acgctgacggccacgccgatcccgcgcacgctgggcatggcgctcgaaggcctgcgcgac
ctgagcgtgatcgccaccgcgccgcaacgccggctcgcgatcaagaccttcgtgcgcaac
gaaggcaccggcgtgatccgcgaggccgtgctgcgcgagctgaagcgcggagggcaggtc
tacttcctgcacaacgaagtcgagaccatcgagaaccgccgccagaagctcgaagaaata
ttgcccgaagcccgcatcgcggtggcccatggccagatgcccgagcgcgagctggaacgc
gtgatgcgcgacttcgtggcgcaacgctacaacctcttgttgtgctcgaccatcatcgag
accggcatcgacgtgccgaccgccaacacgatcgtgatgagccgtgccgacaagttcggc
ctggcgcagctgcaccagctgcgcggccgcgtcgggcgctcgcaccaccaggcgtatgcg
tacctgatggtcccggacaccgaaggtctcaccaagcaggcggcgcagcggctcgacgcg
atccagcagatggaagaacttggcagcggcttctacctcgcgatgcacgacctggagatt
cgcggcgccggcgaggtgctcggcgagaaccagagcggcaacatgatggagatcggtttc
cagctctacaacgaaatgctgagcgaagcggtgcgctcattgaaggaaggcaaggaaccc
gacctgctctcgccgctgcacgtcaccaccgagatcaacctgcacgcgcctgccctgctg
cccgacaactactgcggcgacgtgcacctgcgcctgtcgttctacaagaagctcgccacc
gccaagacctccgaccagatcgacacgctgctcgaggagatcgtcgaccgcttcggcaag
ctgccaccgcaggcgcagacgctgatcgacacgcaccgcctgcgggtgttggcgcggccc
tacggcgtggtcaaggtcgatgcggcgccgggcgtgatccacatcacgttcaagaaagac
ccaccggtcgattcgatggcgatcattcacttgatccagaagaacaagcacatcaagctg
gccggcaacgagaagctgcgcatcgagcgcgagttgaaagagcccaaggagcgcgcgcag
atggtgagggatgtgctgcgcagtctcggccaacccaaagtacaggaacccgtcgccgca
tga
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