Vibrio alfacsensis: D1115_04940
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Entry
D1115_04940 CDS
T05841
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1115_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_04940
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1115_04940
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D1115_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXY00674
UniProt:
A0A347UP95
LinkDB
All DBs
Position
I:complement(1006389..1009850)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSGSGDKKQLGNLPGAALAMAIAELAKQHKSHALLVVPDPQIALKLQAE
IEQFIDKPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPHQRDGVTIVPVSTVLQRQS
PRDFLLQHTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PYRIDFFDDEIDTIRTFDPENQRSVEDIEQIQLLPAHEFPTTKSAIEDFRTRWRSQFEAR
REPESVYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPDDSLLITYGDIETAIDTFLNDV
EYRYDQKKIDPLRPLLAPHELWLKKDELFTYFKQLPQAQLSSEKIVKRAGRENLAARSLT
ELGVQQQNKEPLARLRQFSEQFTGKIVFSVESEGRREALTELLQGIKVRPVVHDSLYKAL
GSDDRFSLILGAAEHGFVHDELGFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYLGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRGQYATFKATF
PFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREDAVIREAVLREIMRGGQVYFLHNQVETIEKAAEDLQKLVPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEIEMRIPALLPDDYI
PDVNTRLSMYKRIASVTDFDGLSELKVELIDRFGLLPDAAKNLLAISELKIGAACLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLTDRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgattctatcggtcacaaacccatcaggttctggtgacaaaaagcaa
cttggcaacctcccaggggcggcattagcgatggccattgctgagcttgctaaacagcat
aaaagccacgctttacttgtcgtgcccgaccctcaaatcgcgctaaaactgcaagccgaa
atcgaacagtttattgataagcctgttagtctgtttccagattgggaaacattaccttac
gacaacttttcaccacatcaagaaatcatctccgaccgtatcgctcgtttatatcaattg
cctcatcaacgcgacggtgtcacgattgtgccagtcagtacggtgttacaacgtcaatca
ccacgcgacttcttgctgcaacacactttgatggtcaaaacaggtgatcaattttcatta
gataagttgcgtgtccagttagaaaactctggctatcgccatgttgatcaggtatttggt
cccggtgaatacgcaagccgcggttcaattcttgacttattcccaatgggcagctccgat
ccgtaccgcattgatttcttcgatgatgaaattgataccattcgtacgtttgatcccgaa
aatcaacgctccgttgaagacattgaacaaattcaattactacctgctcatgaattccca
accacaaaatccgcaatagaagattttcgcacccgttggcgctctcaatttgaagcaaga
cgtgagcctgaatctgtttacatgcaagtgacaaaaggaacttggcctgccggtatcgag
tattggcaaccccttttcttcgatcatactgaaaccctattcgattacttgccggatgat
tccctactcatcacctatggtgatattgaaacggcaatcgatacgttcttaaatgacgtt
gaataccgttacgatcaaaagaaaattgacccattacgtccgctgcttgctccccatgaa
ttgtggttaaagaaagatgaactgtttacgtacttcaaacagttacctcaagctcaatta
agttcagaaaaaatcgtaaaacgtgcgggtcgagaaaacctagccgcgcgatctctcact
gaacttggtgttcagcagcaaaacaaagagccacttgctcgattacgacaatttagcgag
caattcaccggtaaaattgttttttctgtagagtcagagggtcgccgtgaagcgctcaca
gagctattgcaaggaattaaagttcgccccgtagtgcatgactcgctctacaaagcactc
ggttctgatgaccgttttagcttgatcctcggtgcggcagaacatggttttgttcatgat
gagctaggcttcgctctgatctgtgaaagcgacttattgggtgatcgcgtcatccaacgt
cgtcgcaaagataagaaagcagtcaacagcgacaccgtgattcgccatcttgccgaactc
aaacctggtcaacccgtcgtacatatcgatcatggtatcggtcgataccttggcctccaa
accctcgaagctggcggcatgaaaaccgaatacgtgacgttggagtatcaaaatgatgcc
aagctctatgttcccgtatcctctttaaacctaatcagtcgctactcaggtggagcagaa
gaaagtgcacctctacataagttaggcggggaagcatgggccaaagctcggcgtaaagcg
gcggaaaaagtccgcgatgtggctgccgagcttctggatgtgtacgctaaacgtgagtta
aaaccaggttataaattcgcactcgatcgcggccagtacgctacctttaaagcgacgttc
ccgtttgaagaaaccgatgatcaatctatggcaatcaacgctgtcttgtctgacatgtgt
caagctaaagccatggaccgcctcgtgtgtggtgatgtcggttttggtaaaactgaagtg
gccatgcgcgcggcttttgttgccacagacaacagcaagcaagttgcggtgttggtgccc
acgaccctgcttgctcagcagcactttgaaaacttccgtgaccgatttgccaatctgcca
atccgagtagaagtcctatcgcgctttaaatctgctaaagaacagaaagtgattcttcaa
gacgttgctgacggcaaagtcgatatcgtggtgggcactcacaaattactttctagcgat
atcaagttcaaagaccttggtttattgatcgtcgatgaagaacatcgctttggtgtgcgc
caaaaggaaaaagtgaaagcgatgcgtgcggatgtcgacattctaacgcttaccgcgaca
ccaattccgcgaacgttgaacatggcgatgagtggcatgcgcgacttgtcgatcatcgcg
acaccgccagcacgccgtttggcaatcaaaacgtttgtacgccaacgtgaagacgccgtg
attcgtgaagcggtactacgtgaaatcatgcgtggtggtcaggtgtatttcctacataac
caagtcgagaccatcgaaaaagcggcggaagacctgcaaaaactggttccagaagcacgc
gtaacggttgcccacggtcaaatgcgtgaacgcgagctagagcgcatcatgaacgacttc
taccaccaacgtttcaatttgttggtttgtacgaccatcatcgaaaccggcattgacgtt
ccaaccgcgaacaccatcattatggatcgcgccgacaatcttggtcttgctcaacttcac
caattacgtggccgagttgggcgttcgcatcaccaagcttatgcatatttattgacccct
catccaaaagccattacgaaagacgccatcaaacgcctcgacgctatcgcttcactcgaa
gatctgggggcgggctttacgctggctacgcacgatcttgagatccgtggcgctggtgag
ctactgggtgatgaacaaagtggtcaaattcaatctgttggttttacactgtatatggaa
atgcttgaacaagccgttgaagcgttgaaagaggggaaagagccatcactggatgattta
ctgcgtgagcagacagagattgaaatgcgaattcctgcactgctgccagatgattatata
ccagacgttaatactcgcctgtctatgtacaaacgcatcgccagtgtgacggacttcgat
gggttatctgaactcaaagtggagttgattgatcgttttggtttgttacctgatgctgcg
aaaaacctgcttgccatttctgaactaaaaattggtgccgcgtgccttaaagcgaagaaa
atcgaggcacatgataaaggcggattcatcgagttttacccagatgctgacataaaccca
gcgtatttggttaaactcctgcagtcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattgacggaccgacgtaaacgcattcaatttgtccaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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